Table 1.
Global Average Statistics of Sequencing and Mapping of different Platforms and Kits.
| Platform | Kit | Cell Number |
Raw Reads (M) |
Sample Number |
Unique Mapping Rate (%) |
Coverage (%) |
GC Content (%) |
Duplication Reads Rate (%) |
Mismatch Rate (%) |
Deletion Rate (%) |
Insertion Rate (%) |
Error Rate (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HiSeq 2000 |
WGA4 kit | 1 | 2 | 11 | 63.01 | 0.30 | 39.67 | 5.34 | 1.76 | 0.03 | 0.02 | 1.81 |
| WGA4 kit | 3–8 | 2 | 11 | 61.85 | 0.31 | 39.74 | 2.06 | 1.90 | 0.03 | 0.03 | 1.96 | |
| PicoPLEX WGA Kit | 1 | 2 | 11 | 58.47 | 0.32 | 44.11 | 1.18 | 1.44 | 0.05 | 0.06 | 1.55 | |
| PicoPLEX WGA Kit | 3–8 | 2 | 11 | 58.95 | 0.33 | 44.08 | 1.04 | 1.43 | 0.04 | 0.05 | 1.52 | |
| Proton | WGA4 kit | 1 | 2 | 11 | 91.31 | 4.60 | 42.05 | 13.43 | 1.31 | 0.31 | 0.46 | 2.08 |
| WGA4 kit | 3–8 | 2 | 11 | 91.18 | 5.15 | 41.68 | 11.97 | 1.26 | 0.30 | 0.42 | 1.98 | |
| PicoPLEX WGA Kit | 1 | 2 | 11 | 90.96 | 5.24 | 45.29 | 10.77 | 1.47 | 0.35 | 0.43 | 2.25 | |
| PicoPLEX WGA Kit | 3–8 | 2 | 11 | 91.83 | 5.47 | 45.15 | 10.26 | 1.49 | 0.37 | 0.43 | 2.29 |