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. 2018 Mar 19;6:e4510. doi: 10.7717/peerj.4510

Table 1. Identification by mass spectroscopy of larval and adult Haemonchus contortus proteins eluted from LGALS-11 and LGALS-14 columns.

Accession code Gene description CV PSMs UP Mascot score Groups Log-odds NSAF MW (kDa) Signal peptide Number of N-and (blue)/ or O-glycosylation sites (red)a
1 2 3 4
Metabolic process
W6NE18 Peptidase S28 GN=HCOI_01497800 45.21 634 20 7,058 No Yes Yes Yes 145.70 0.071 67.1 No 1/5
W6NFG0 Alpha beta hydrolase fold-1 GN=HCOI_00457700 58.65 504 16 6,681 No Yes Yes Yes 128.68 0.129 36.6 Yes 1/0
W6NFT9 Peptidase S28 GN=HCOI_01562400 23.27 222 18 3,151 No Yes No Yes 11.26 0.0062 128.6 Yes 7/35
W6NJ96 Carboxyl transferase GN=HCOI_00766200 23.39 123 10 1,146 No Yes No Yes 16.01 0.0103 56.1 No 0/7
W6NLA8 Glutamate phenylalanine leucine valine dehydrogenase GN=HCOI_01838800 42.50 102 10 957 No Yes No Yes 20.61 0.020 26.8 No 0/0
W6NG90 Peptidase S28 GN=HCOI_01624000 4.88 101 3 1,218 No Yes No Yes 29.6 0.003 117.0 Yes 4/7
W6NC58 Aldo keto reductase GN=HCOI_00043700 39.64 83 10 789 No Yes No Yes −0.18 0.009 38.0 No 3/6
W6NAV8 Aldo keto reductase GN=HCOI_00043500 27.22 46 6 477 No Yes No Yes −0.18 0.0028 40.0 No 2/4
W6NU27 Carboxyl transferase GN=HCOI_00766300 25.83 67 6 909 No Yes No Yes 4.35 0.0023 42.2 No 1/0
W6NKM1 Succinate dehydrogenase iron-sulfur subunit, GN=HCOI_01735500 32.61 64 8 521 No Yes No Yes 34.83 0.0067 31.6 No 1/10
W6NF70 Deoxynucleoside kinase GN=HCOI_01673500 35.42 42 6 242 No No No Yes −0.18 0.0012 34.8 No 0/0
U6NNG6 Ribosomal protein L7 L12 GN=HCOI_00340500 11.41 30 1 783 No Yes No Yes −0.18 0.013 19.5 No 1/3
W6NA79 Zinc metallopeptidase M13 GN=HCOI_01030800 37.90 28 3 330 No No No Yes 4.35 0.0067 14.6 No 0/2
W6ND82 von Willebrand factor domain containing protein GN=HCOI_01354500 13.82 26 3 371 No No No Yes 16.01 0.0077 27.5 Yes 2/0
W6NMI7 Proteinase inhibitor I33 GN=HCOI_02015200 18.58 22 5 162 No No No Yes −0.18 0.0020 25.1 Yes 0/7
W6NKG5 Ribosomal protein L15 GN=HCOI_01717500 5.88 4 1 26 No No No Yes 5.67 0.0002 24.3 No 1/10
W6NEW9 Amidinotransferase GN=HCOI_01556200 23.35 24 4 109 No Yes No No −0.18 0.0014 29.2 No 0/0
W6NI22 Adenylosuccinate lysase GN=HCOI_00436500 6.41 14 3 141 No Yes No No 12.23 0.0005 76.9 No 1/4
W6NF84 Short-chain dehydrogenase reductase GN=HCOI_01467500 3.07 11 1 137 No Yes No Yes 1.71 0.0003 27.5 No 0/0
W6ND43 Acetyltransferase component of pyruvate dehydrogenase complex GN=HCOI_00576100 1.22 8 1 51 No Yes No No 1.68 0.0001 78.3 No 1/40
Regulation of biological processes
W6NC73 ATPase GN=HCOI_02138200 22.64 23 2 418 No Yes No Yes −0.18 0.004 17.8 No 1/0
W6NJ12 Filament domain containing protein GN=HCOI_02013700 14.09 20 3 291 No Yes No Yes −0.18 0.0028 34.2 No 0/4
W6NM02 Fumarate lyase GN=HCOI_01914600 4.73 8 1 62 No Yes No No 4.61 0.0003 29.7 No 1/12
W6NGK5 CRE-DHS-15 protein GN=HCOI_00341400 29.31 6 1 210 No No No Yes −0.18 0.0031 6.1 No 0/1
W6NI80 Acyl-CoA-binding protein GN=HCOI_01539100 20.69 6 1 205 No Yes No Yes 6.69 0.0018 9.5 No 0/1
W6NCC1 NIPSNAP GN=HCOI_01963300 7.63 6 1 75 No Yes No No −0.18 0.0013 26.5 No 0/6
W6NWY9 Porin domain containing protein GN=HCOI_01573900 43.97 82 9 1,149 No Yes No Yes 4.35 0.011 30.2 No 3/0
W6NAW4 FG-GAP and Integrin alpha-2/Integrin alpha chain GN=HCOI_01903100 5.90 33 5 340 No Yes No Yes −0.18 0.0028 133.9 Yes 5/18
W6NAL4 Heat shock protein 70 GN=HCOI_00589700 7.24 9 1 82 No Yes No No 7.23 0.0002 72.4 No 3/7
Transport
W6NVQ1 Lipid transport protein and Vitellinogen and von Willebrand factor domain GN=HCOI_01683400 23.18 209 24 1,465 No Yes No Yes 9.62 0.0039 156.0 No 0/11
W6N9I2 Lipid transport protein GN=HCOI_00072100 35.97 139 13 1,313 No Yes No Yes 51.51 0.0136 56.8 Yes 0/2
W6NQZ5 Mitochondrial substrate solute carrier GN=HCOI_01092000 23.10 53 8 334 No No No Yes 6.2 0.0033 36.3 No 0/3
Cytoskeleton
W6NAH7 Nematode cuticle collagen and Collagen triple helix repeat GN=HCOI_00810700 5.60 85 2 1,399 No Yes No Yes 4.35 0.0117 32.8 No 0/15
W6NHH0 Annexin GN=HCOI_01003500 14.01 22 3 135 No Yes No No −0.18 0.0008 29.4 No 0/1
W6NE41 Myosin tail GN=HCOI_01216000 3.99 17 3 59 No Yes No No 13.42 0.0008 54.7 No 0/15
W6NF56 Myosin tail GN=HCOI_01461300 34.48 51 8 675 No Yes No Yes 6.2 0.0040 36.5 No 0/14
Immunomodulatory
W6NGA7 SCP extracellular domain GN=HCOI_01577700 14.95 4 2 59 No Yes No Yes −0.18 0.0011 22.2 No 1/1
Unknown
W6NAN9 CBN-MLC-3 protein GN=HCOI_01274700 49.67 63 7 465 No Yes No Yes 2.32 0.0086 17.0 No 0/2
W6NX42 Uncharacterized protein GN=HCOI_01051700 25.56 38 3 607 No No No Yes 19.09 0.0066 25.5 No 4/40
W6NFI4 Protein C15F1.2 GN=HCOI_01126300 34.87 20 4 97 No Yes No Yes −0.18 0.0022 27.1 Yes 0/13
W6NB42 Protein C23H5.8, isoform-c GN=HCOI_00648100 14.43 16 2 170 No Yes No Yes 10.80 0.0025 22.5 Yes 1/1
W6NPK3 Uncharacterized protein GN=HCOI_00260500 5.20 10 1 45 No No No Yes −0.18 0.0001 22.6 Yes 3/11
W6NUX4 Uncharacterized protein GN=HCOI_01608400 4.04 12 1 43 No Yes No Yes 4.04 0.0002 21.8 Yes 0/6

Notes.

GN
Gene name
CV
Coverage
PSMs
Peptide spectrum matches
UP
Unique peptides
Log-odds 0
50% chance
Positive values
More than 50%
Negative values
Less than 50%

Groups: 1, LGALS-11 bound protein from L4 larval stage of H. contortus; 2, LGALS-11 bound protein from adult stage of H. contortus; 3, LGALS-14 bound protein from L4 larval stage of H. contortus; 4, LGALS-14 bound protein from adult stage of H. contortus.

a

Predicated glycosylation sites as determined in materials and methods.

NSAF, Normalized Spectral Abundance Factor.