Skip to main content
. 2018 Mar 22;13(3):e0194366. doi: 10.1371/journal.pone.0194366

Table 3. Read mapping statistics for HBV sequencing runs after error correction using NanoCorrect.

NanoCorrect + LAST
Pass reads Sanger sequence length (nt) No of corrected Pass reads No of mapped reads Mean Alignt read length (nt) Max Alignt read length (nt) No of reads covering ≥ 95% of the Sanger sequence Mean Alignt Identity (min-max) (sequences covering ≥ 95% of Sanger) Mean Miscall rate (sequences covering ≥ 95% of Sanger) Mean insertion rate (sequences covering ≥ 95% of Sanger) Mean Deletion rate (sequences covering ≥ 95% of Sanger) Mean total error rate (sequences covering ≥ 95% of Sanger)
B5584 1,875 3,209 1,673 1,485 2,892 3,209 1,065 86.7% 5.2% 1.8% 4.6% 11.6%
(72%)* (60.2–99.0) (0.0–15.7) (0.0–7.9) (1.0–14.0) (1.1–32.3)
B6260c 4,962 3,032 3,975 3,509 2,555 3,032 1,993 88.2% 5.6% 2.1% 4.5% 12.3%
(57%)* (67.3–98.7) (0.0–19.5) (0.0–8.6) (1.1–12.2) (1.4–34.0)

*Percentage calculated against the number of corrected and mapped reads

No: Number

Alignment length values are rounded to the nearest whole number.