Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Jan 15;12(4):981–996. doi: 10.1038/s41396-017-0034-4

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Fig. 2 — a Phylogenetic relationships between Alteromonas Te101 and other members of the genus Alteromonas. The tree is based on a concatenated set of 1015 proteins from the shared core proteome of all available Alteromonas genomes and Pseudoalteromonas atlantica T6c, which was used as an outgroup. The numbers at branches represent bootstrap values in percent. b Flexible genomic islands (fGIs) and differentially expressed TSSs. Differentially expressed TSSs are visualized on the upper panel, the y axis shows the log₂-transformed fold changes. Genomic-wide synteny and fGIs (vertical blue rectangles) are shown on the lower panel. The chromosome of the A. macleodii ‘English Channel 673’ was used as a reference to detect fGIs in the Alteromonas Te101 chromosome. In the same way, the plasmid pTE101 was compared against the plasmid pAMDE1-300 of A. mediterranea strain DE1. If known, the fGI’s function is given on top. N.D represents not determined. For the list of genes within these fGIs, see Table S1