Table 1.
Deep sequencing analysis of soil samples
| Experiment ID | Replicationa | No. of sequencesb | No. of Burkholderia sequences | Proportion of Burkholderiac | Proportion of Burkholderia group %d | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| SBE | Ambiguous A | BCC&P | Ambiguous B | PBE | Unmappedc | |||||
| 0S | 1 | 91,884 | 62 | 0.07 | 65.6 | 0 | 4.9 | 4.9 | 18.0 | 6.6 |
| 2 | 54,218 | 30 | 0.06 | 76.7 | 0 | 0 | 13.3 | 3.3 | 6.7 | |
| 3 | 85,407 | 60 | 0.07 | 76.7 | 0 | 1.7 | 5.0 | 15.0 | 1.7 | |
| 2S | 1 | 93,985 | 541 | 0.58 | 24.5 | 0 | 50.9 | 14.0 | 3.3 | 7.5 |
| 2 | 90,666 | 514 | 0.57 | 23.4 | 0 | 52.0 | 15.3 | 3.6 | 5.8 | |
| 3 | 98,302 | 539 | 0.55 | 31.6 | 0 | 45.0 | 15.6 | 3.4 | 4.4 | |
| 4S | 1 | 75,400 | 1371 | 1.8 | 18.7 | 0 | 3.0 | 14.3 | 62.6 | 1.3 |
| 2 | 94,871 | 1851 | 2.0 | 14.3 | 0 | 2.6 | 18.6 | 61.9 | 2.7 | |
| 3 | 92,846 | 1837 | 2.0 | 18.8 | 0 | 3.1 | 13.4 | 62.6 | 2.2 | |
| 6S | 1 | 128,961 | 9014 | 7.0 | 66.1 | 0 | 3.4 | 4.1 | 24.9 | 1.6 |
| 2 | 94,365 | 6424 | 6.8 | 65.5 | 0 | 4.1 | 2.1 | 26.6 | 1.8 | |
| 3 | 77,321 | 5330 | 6.9 | 61.0 | 0 | 4.1 | 3.0 | 29.7 | 2.3 | |
a Three replications were prepared for each MEP-spraying treatment
b Number of sequences after removal of low quality, chimeric, and archaeal sequences
c Proportion of Burkholderia sequences to bacterial seqeunces
d Proportion of sequences of each Burkholderia groups to Burkholderia seqeunces