Table 3.
Other variants involved in transcription regulation between MS and healthy controls
| SNP | Location* | Region | Candidate gene | ||
|---|---|---|---|---|---|
| rs228614 | Chr4: 102657480 | Intronic | NFKB1/MANBA | ||
| rs11154801 | Chr6: 135418217 | Intronic | MYB/AHI1 | ||
| rs9321619 | Chr6: 137553271 | Intergenic | OLIG3 | ||
| rs4410871 | Chr8: 127802783 | Intronic | MYC | ||
| rs4902647 | Chr14: 68787474 | Downstream | ZFP36L1 | ||
| rs2300603 | Chr14: 75539214 | Intronic | BATF | ||
| rs744166 | Chr17: 42362183 | Intronic | STAT3 | ||
| SNP | MS MAF (allele) | HC MAF (allele) | χ2 | P | OR (95% CI) |
| rs228614 | 0.48 (A) | 0.48 (G) | 1.005 | 0.361 | 0.864 (0.649–1.150)† |
| rs11154801 | 0.36 (A) | 0.35 (A) | 0.067 | 0.796 | 1.040 (0.771–1.404) |
| rs9321619 | 0.36 (A) | 0.39 (A) | 0.559 | 0.455 | 0.894 (0.665–1.200) |
| rs4410871 | 0.30 (T) | 0.34 (T) | 1.205 | 0.272 | 0.842 (0.620–1.144) |
| rs4902647 | 0.30 (C) | 0.33 (C) | 0.648 | 0.421 | 0.881 (0.648–1.199) |
| rs2300603 | 0.31 (C) | 0.27 (C) | 2.139 | 0.144 | 1.260 (0.924–1.719) |
| rs744166 | – | – | – | – | |
*Position is based on GRCh38.p10 and dbSNP Build 141; †For Allele A. MS: Multiple sclerosis; HC: Healthy controls; SNP: Single-nucleotide polymorphisms; CI: Confidence interval; –: Not available; MAF: Minor allele frequency; OR: Odds ratio.