Table 2. Comparison of RT-qPCR conditions using the pre-existing in-house RT-qPCR assay*.
Factor | Mastermix# | Sample volume | Reaction volume | Annealing temperature | Primer concentration | Probe concentration |
---|---|---|---|---|---|---|
I Mastermix | 1. Superscript-III 2. Express 3. Fastvirus |
5μl | 1. 25μl 2. 20μl 3. 25μl |
60°C | 400nM | 160nM |
II Reaction volume | Superscript-III | 1. 5μl 2. 10μl |
1. 25μl 2. 50μl |
60°C | 400nM | 160nM |
III Sample volume | Superscript-III | 1. 10μl 2. 16μl |
50μl | 60°C | 400nM | 160nM |
Fastvirus | 1. 5μl 2. 15μl |
25μl | 60°C | 400nM | 160nM |
* All experiments were performed with G1-1326 RNA tenfold dilutions.
#Superscript-III kit: SuperScript™ III One-Step RT-PCR System with Platinum™ Taq DNA Polymerase; Express kit: EXPRESS One-Step SuperScript® qRT-PCR and Fastvirus kit: TaqMan® Fast Virus 1-Step.