Table IV.
A, Biological processes | ||||
---|---|---|---|---|
GO Term | Function | Count | FDR | Examples of DEGs |
GO:0000280 | Nuclear division | 31 | 3.83×10−6 | CCNB1, CCNB2, PLK1, AURKB, CCNG2 |
GO:0007067 | Mitosis | 31 | 3.97×10−6 | KIF23, CCNA2, CCNB2, PLK1, CDCA2 |
GO:0000087 | M phase of mitotic cell cycle | 31 | 5.90×10−6 | KIF23, KIFC1, KIF22, NEK2, HAUS1 |
GO:0000278 | Mitotic cell cycle | 41 | 8.90×10−6 | CDKN1A, CCNB2, PLK2, PLK1, RNF2 |
GO:0048285 | Organelle fission | 31 | 9.98×10−6 | NDC80, UBE2C, CDC25A, CCNB1, CCNB2 |
GO:0022403 | Cell cycle phase | 42 | 7.08×10−5 | BCAT1, KIF23, KIF22, KIFC1, PRC1 |
GO:0051301 | Cell division | 34 | 9.05×10−5 | CCNE2, SPC25, NDE1, CDKN2A, NCAPG |
GO:0000279 | M phase | 36 | 1.25×10−4 | CCNA2, ERCC6L, KIF11, DLGAP5, NUF2 |
GO:0007049 | Cell cycle | 61 | 4.66×10−4 | CCNB2, PLK2, RGS2, MAPK13, PLK1 |
GO:0022402 | Cell cycle process | 48 | 1.36×10−3 | BCAT1, KIF23, KIF22, KIFC1, PRC1 |
GO:0009101 | Glycoprotein biosynthetic process | 22 | 1.56×10−3 | GALNT3, ST6GAL1, ST6GAL2, LDLR, FUT8 |
GO:0009100 | Glycoprotein metabolic process | 24 | 7.23×10−3 | GALNT3, ST6GAL1, ST8SIA1, CHST3, ABCG1 |
GO:0043413 | Biopolymer glycosylation | 18 | 1.72×10−2 | GALNT3, ST6GAL1, ABCG1, MPDU1, B3GNT3 |
GO:0006486 | Protein amino acid glycosylation | 18 | 1.73×10−2 | COG7, ST3GAL4, B3GNT7, ST3GAL6, MPDU1 |
GO:0070085 | Glycosylation | 18 | 1.73×10−2 | GALNT3, ST6GAL1, ST6GAL2, ALG1, ST3GAL1 |
GO:0055114 | Oxidation reduction | 23 | 3.15×10−2 | DHRS9, ACADL, GMPR, ALDH1A1, AKR1C3 |
B, Cellular components | ||||
Term | Function | Count | FDR | Examples of DEGs |
GO:0005819 | Spindle | 20 | 5.53×10−3 | KIF23, NDE1, APP, PLK1, SKA1 |
GO:0000779 | Condensed chromosome, centromeric region | 13 | 1.02×10−2 | CENPN, NUF2, CENPF, NDC80, AURKB |
GO:0000793 | Condensed chromosome | 18 | 1.36×10−2 | CENPN, NEK2, SKA1, CENPF, CHEK1, |
GO:0000777 | Condensed chromosome kinetochore | 12 | 1.61×10−2 | SPC25, CENPN, NDE1, CENPA, NUF2, |
GO:0005624 | Membrane fraction | 56 | 4.37×10−2 | NPR3, RGS16, CCNB2, APP, CHRM2 |
GO:0000776 | Kinetochore | 13 | 4.48×10−2 | KIF22, CENPN, NUF2, CENPF, CENPK |
GO:0005626 | Insoluble fraction | 56 | 4.12×10−2 | CYP2J2, CADM1, CCNB2, NPR3, RGS16 |
C, Molecular functions | ||||
Term | Function | Count | FDR | Examples of DEGs |
GO:0008373 | Sialyltransferase activity | 7 | 4.14×10−2 | ST6GAL1, ST6GAL2, ST3GAL4, ST3GAL6 |
GO:0016229 | Steroid dehydrogenase activity | 4 | 1.89×10−2 | AKR1C3, HSD11B2, DHRS9, HSD17B6 |
GO:0050327 | Testosterone 17-beta-dehydrogenase activity | 2 | 2.62×10−2 | AKR1C3, HSD17B6 |
GO, gene ontology; FDR, false discovery rate; DEGs, differentially expressed genes.