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. 2018 Feb 1;27(4):880–885. doi: 10.1002/pro.3373

Table 1.

Data Collection, Phasing, and Refinement Statistics

Data set holo‐TpMglB‐2WA apo‐TpMglB‐2WA
PDB accession no. 6BGC 6BGD
Data collection
Space group P1 C2221
Unit cell dimensions (Å)
a 44.257 75.834
b 61.592 110.199
c 70.350 89.304
α(°) 80.2 90.0
β (°) 77.6 90.0
γ (°) 72.7 90.0
Resolution (Å) 39.73–2.08 (2.12–2.08)a 37.9–1.47 (1.50–1.47)
Completeness (%) 91.8 (91.1) 95.4 (74.8)
Multiplicity 2.5 (2.3) 4.4 (4.2)
Unique reflections 36,146 (1816) 60,862 (2362)
R merge b 0.080 (0.315) 0.068 (0.386)
<I>/σ I 9.8 (2.1) 19.7 (2.7)
Wilson B2) 19.8 10.4
Refinement
Resolution (Å) 39.73–2.08 37.9–1.47
No. residues 736 373
No. non‐solvent atoms 5561 2770
No. solvent atoms 221 466
Maximum‐likelihood coordinate error (Å) 0.22 0.1
Average B‐factors
Non‐solvent (Å2) 30.15 14.91
Ligand 16.87 N/A
Solvent (Å2) 25.94 28.59
R‐values
 R work c 0.180 0.114
 R free d 0.220 0.144
Ramachandran statistics
Outliers (%) 0.3 0.3
Most favored region (%) 97.3 97.9
r.m.s. deviations
Bonds (Å) 0.003 0.009
Angles (°) 0.698 1.264
a

Numbers in the parentheses are reported for the highest‐resolution shell of reflections.

b

Rmerge=hkli|Ih,iIh|/hkliIh,i where the outer sum (hkl) is over the unique reflections and the inner sum (i) is over the set of independent observations of each unique reflection.

c

Rwork=hkl||Fo||Fc||/hkl|Fo|, where F o and F c are observed and calculated structure factor amplitudes, respectively.

d

R free is calculated using the same formula as R work, but the set hkl is a randomly selected subset (5%) of the total structure factors that are never used in refinement.