Table 1.
Data set | holo‐TpMglB‐2WA | apo‐TpMglB‐2WA |
---|---|---|
PDB accession no. | 6BGC | 6BGD |
Data collection | ||
Space group | P1 | C2221 |
Unit cell dimensions (Å) | ||
a | 44.257 | 75.834 |
b | 61.592 | 110.199 |
c | 70.350 | 89.304 |
α(°) | 80.2 | 90.0 |
β (°) | 77.6 | 90.0 |
γ (°) | 72.7 | 90.0 |
Resolution (Å) | 39.73–2.08 (2.12–2.08)a | 37.9–1.47 (1.50–1.47) |
Completeness (%) | 91.8 (91.1) | 95.4 (74.8) |
Multiplicity | 2.5 (2.3) | 4.4 (4.2) |
Unique reflections | 36,146 (1816) | 60,862 (2362) |
R merge b | 0.080 (0.315) | 0.068 (0.386) |
<I>/σ I | 9.8 (2.1) | 19.7 (2.7) |
Wilson B (Å2) | 19.8 | 10.4 |
Refinement | ||
Resolution (Å) | 39.73–2.08 | 37.9–1.47 |
No. residues | 736 | 373 |
No. non‐solvent atoms | 5561 | 2770 |
No. solvent atoms | 221 | 466 |
Maximum‐likelihood coordinate error (Å) | 0.22 | 0.1 |
Average B‐factors | ||
Non‐solvent (Å2) | 30.15 | 14.91 |
Ligand | 16.87 | N/A |
Solvent (Å2) | 25.94 | 28.59 |
R‐values | ||
R work c | 0.180 | 0.114 |
R free d | 0.220 | 0.144 |
Ramachandran statistics | ||
Outliers (%) | 0.3 | 0.3 |
Most favored region (%) | 97.3 | 97.9 |
r.m.s. deviations | ||
Bonds (Å) | 0.003 | 0.009 |
Angles (°) | 0.698 | 1.264 |
Numbers in the parentheses are reported for the highest‐resolution shell of reflections.
where the outer sum (hkl) is over the unique reflections and the inner sum (i) is over the set of independent observations of each unique reflection.
, where F o and F c are observed and calculated structure factor amplitudes, respectively.
R free is calculated using the same formula as R work, but the set hkl is a randomly selected subset (5%) of the total structure factors that are never used in refinement.