Table 1.
Proteome of inner membrane lipid rafts. Normalized spectra count of proteins in both the inner membrane lipid raft (DRM) and the soluble fractions for three technical replicates (TR).
| Name | Symbol | Gene | Lipid rafts inner membrane | Soluble fractions | T-test (p-value) | ||||
|---|---|---|---|---|---|---|---|---|---|
| TR1 | TR2 | TR3 | TR1 | TR2 | TR3 | ||||
| Uncharacterized protein | BB_0039 | 13.008 | 10.339 | 11.632 | 0 | 0 | 0 | 0.00011 | |
| Uncharacterized protein | BB_0058 | 6.0705 | 6.8924 | 4.9852 | 0 | 0 | 0 | 0.00041 | |
| V-type ATP synthase subunit B | atpB | BB_0093 | 18.211 | 17.231 | 16.617 | 0 | 0 | 0 | < 0.00010 |
| ATP synthase subunit A | BB_0094 | 11.274 | 9.477 | 11.632 | 3.6696 | 2.3942 | 3.6156 | 0.00065 | |
| Uncharacterized protein | BB_0103 | 5.2033 | 4.3077 | 4.9852 | 1.2232 | 0 | 0 | 0.00083 | |
| Periplasmic serine protease | HtrA | BB_0104 | 22.547 | 21.539 | 21.603 | 6.1159 | 5.9856 | 4.8208 | < 0.00010 |
| membrane fusion protein | BB_0141 | 6.0705 | 5.1693 | 6.6469 | 0 | 1.1971 | 0 | 0.00069 | |
| Protein translocase subunit SecA | BB_0154 | 9.5393 | 10.339 | 9.9704 | 0 | 0 | 0 | < 0.00010 | |
| guanosine-3′,5′-bis(diphosphate) 3′-pyrophosphohydrolase | spoT | BB_0198 | 4.336 | 5.1693 | 4.9852 | 0 | 0 | 0 | < 0.00010 |
| Protein HflK | hflk | BB_0203 | 4.336 | 6.8924 | 6.6469 | 0 | 0 | 0 | 0.0019 |
| protein HflC | HflC | BB_0204 | 6.9377 | 5.1693 | 6.6469 | 0 | 0 | 0 | 0.00034 |
| phosphate ABC transporter substrate-binding protein | pstS | BB_0215 | 10.407 | 10.339 | 9.1396 | 0 | 0 | 0 | < 0.00010 |
| Uncharacterized protein | BB_0228 | 15.61 | 16.369 | 15.786 | 0 | 0 | 0 | < 0.00010 | |
| Uncharacterized protein | BB_0238 | 13.875 | 13.785 | 13.294 | 2.4464 | 2.3942 | 2.4104 | < 0.00010 | |
| M23 peptidase domain-containing protein | BB_0246 | 3.4688 | 3.4462 | 3.3235 | 0 | 0 | 0 | < 0.00010 | |
| leucine--tRNA ligase | leuS | BB_0251 | 5.2033 | 6.8924 | 4.9852 | 0 | 0 | 0 | 0.0007 |
| ATP-dependent protease La | lon-1 | BB_0253 | 8.6721 | 9.477 | 9.9704 | 0 | 0 | 0 | < 0.00010 |
| transglycosylase SLT domain-containing protein | BB_0259 | 4.336 | 5.1693 | 4.9852 | 0 | 0 | 0 | < 0.00010 | |
| Uncharacterized protein | BB_0261 | 5.2033 | 4.3077 | 3.3235 | 0 | 0 | 0 | 0.0014 | |
| Uncharacterized protein | BB_0298 | 6.0705 | 6.8924 | 5.8161 | 1.2232 | 1.1971 | 2.4104 | 0.00084 | |
| Uncharacterized protein | BB_0319 | 11.274 | 9.477 | 11.632 | 0 | 0 | 1.2052 | 0.00018 | |
| LysM domain protein | LysM | BB_0323 | 16.477 | 17.231 | 15.786 | 2.4464 | 3.5914 | 3.6156 | < 0.00010 |
| peptide ABC transporter substrate-binding protein | BB_0330 | 39.892 | 42.216 | 44.867 | 11.009 | 11.971 | 8.4364 | < 0.00010 | |
| peptide ABC transporter ATP-binding protein | BB_0334 | 7.8049 | 8.6154 | 5.8161 | 1.2232 | 0 | 0 | 0.0016 | |
| peptide ABC transporter ATP-binding protein | OppF | BB_0335 | 6.0705 | 7.7539 | 9.1396 | 0 | 0 | 0 | 0.00099 |
| glutamyl-tRNA(Gln) amidotransferase subunit A | gatA | BB_0342 | 3.4688 | 4.3077 | 4.9852 | 0 | 0 | 0 | 0.00063 |
| proline--tRNA ligase | proS | BB_0402 | 3.4688 | 4.3077 | 4.1543 | 0 | 0 | 1.2052 | 0.0017 |
| membrane protein insertase | YidC | BB_0442 | 4.336 | 3.4462 | 3.3235 | 0 | 0 | 0 | 0.00032 |
| ABC transporter ATP-binding protein | BB_0466 | 3.4688 | 4.3077 | 3.3235 | 0 | 0 | 0 | 0.00027 | |
| Aldose reductase | BB_0528 | 6.0705 | 6.0308 | 5.8161 | 0 | 0 | 0 | < 0.00010 | |
| Long-chain-fatty-acid CoA ligase PE=4 SV=1 | BB_0593 | 31.22 | 31.016 | 30.742 | 11.009 | 7.1827 | 10.847 | < 0.00010 | |
| methyl-accepting chemotaxis protein | BB_0596 | 7.8049 | 5.1693 | 5.8161 | 0 | 0 | 0 | 0.0014 | |
| methyl-accepting chemotaxis protein | BB_0597 | 8.6721 | 8.6154 | 5.8161 | 0 | 0 | 0 | 0.0012 | |
| aminopeptidase | apeB | BB_0627 | 13.875 | 12.923 | 14.125 | 0 | 0 | 0 | < 0.00010 |
| PTS system glucose-specific transporter subunit IIBC | BB_0645 | 3.4688 | 3.4462 | 2.4926 | 0 | 0 | 0 | 0.00062 | |
| protein translocase subunit | SecD | BB_0652 | 6.0705 | 4.3077 | 6.6469 | 0 | 0 | 0 | 0.0013 |
| Lipoprotein | BB_0664 | 2.6016 | 2.5846 | 3.3235 | 0 | 0 | 0 | 0.00031 | |
| signal recognition particle protein | ffh | BB_0694 | 9.5393 | 6.8924 | 8.3087 | 0 | 0 | 0 | 0.00042 |
| Uncharacterized protein | BB_0751 | 5.2033 | 4.3077 | 4.1543 | 1.2232 | 0 | 0 | 0.0014 | |
| Uncharacterized protein | BB_0752 | 18.211 | 12.062 | 17.448 | 0 | 0 | 0 | 0.0012 | |
| ABC transporter ATP-binding protein | BB_0754 | 8.6721 | 9.477 | 9.1396 | 0 | 0 | 0 | < 0.00010 | |
| pyridoxal kinase | BB_0768 | 6.0705 | 6.8924 | 5.8161 | 0 | 0 | 0 | < 0.00010 | |
| ATP-dependent zinc metalloprotease FtsH | FtsH | BB_0789 | 9.5393 | 8.6154 | 9.9704 | 0 | 0 | 0 | < 0.00010 |
| excinuclease ABC subunit A | uvrA | BB_0837 | 6.0705 | 4.3077 | 5.8161 | 0 | 0 | 0 | 0.0006 |
| ornithine carbamoyltransferase | argF | BB_0842 | 6.0705 | 6.0308 | 5.8161 | 0 | 0 | 0 | < 0.00010 |
| arginine-ornithine antiporter | BB_0843 | 3.4688 | 3.4462 | 3.3235 | 0 | 0 | 0 | < 0.00010 | |
| PF-49 protein | BB_A21 | 4.336 | 3.4462 | 4.1543 | 0 | 0 | 0 | 0.00013 | |
| Outer membrane protein | BB_A52 | 6.9377 | 5.1693 | 4.9852 | 0 | 0 | 0 | 0.00079 | |
| oligopeptide ABC transporter OppAIV | OppAIV | BB_B16 | 16.477 | 16.369 | 19.11 | 0 | 0 | 0 | < 0.00010 |
| Protein BptA | bptA | BB_E16 | 4.336 | 5.1693 | 4.9852 | 0 | 0 | 0 | < 0.00010 |
| pyrazinamidase/nicotinamidase PncA | PncA | BB_E22 | 8.6721 | 8.6154 | 9.1396 | 0 | 0 | 0 | < 0.00010 |
| protein coding | PF32 | BB_F24 | 3.4688 | 3.4462 | 2.4926 | 0 | 0 | 0 | 0.00062 |
| antigen P35 | P35 | BB_J41 | 9.5393 | 10.339 | 7.4778 | 1.2232 | 1.1971 | 2.4104 | 0.0013 |
| Uncharacterized protein | BB_K13 | 15.61 | 17.231 | 18.279 | 1.2232 | 1.1971 | 2.4104 | < 0.00010 | |
| PF-49 protein | BB_N33 | 2.6016 | 2.5846 | 3.3235 | 0 | 0 | 0 | 0.00031 | |