Table 2.
LC/MS/MS analysis of EV HIV proteins.
| Accession | # AAs | MW [kDa] | Calc. pI | Description | Σ Coverage | Σ# peptides | Score A0 | Coverage A0 | # peptides A0 |
|---|---|---|---|---|---|---|---|---|---|
| gi38491705 | 192 | 22.7 | 10.1 | Vif protein [human immunodeficiency virus 1] | 13.54 | 12 | 9.22 | 13.54 | 4 |
| gi73913089 | 104 | 11.7 | 10.1 | Gag protein [human immunodeficiency virus 1] | 14.42 | 15 | 6.27 | 14.42 | 4 |
| gi58374258 | 869 | 98.1 | 8.8 | Envelope glycoprotein [human immunodeficiency virus 1] | 1.5 | 5 | 5.63 | 1.5 | 3 |
| gi183197180 | 404 | 45.8 | 8.4 | Pol protein [human immunodeficiency virus 1] | 3.47 | 3 | 5.27 | 3.47 | 3 |
| gi255984636 | 160 | 18.1 | 5.3 | Reverse transcriptase [human immunodeficiency virus 1] | 7.5 | 4 | 4.80 | 7.5 | 2 |
| gi256012108 | 114 | 13.5 | 5.7 | Nef protein [human immunodeficiency virus 1] | 14.04 | 3 | 4.53 | 14.04 | 2 |
| gi9756252 | 524 | 60.4 | 8.7 | Pol precursor [human immunodeficiency virus 1] | 4.01 | 2 | 4.46 | 4.01 | 2 |
| gi67082579 | 191 | 22.3 | 9.4 | Reverse transcriptase [human immunodeficiency virus 1] | 10.47 | 2 | 4.43 | 10.47 | 2 |
| gi2290009 | 852 | 96.7 | 8.5 | Envelope glycoprotein [human immunodeficiency virus 1] | 7.16 | 11 | 4.33 | 5.87 | 3 |
| gi167886806 | 25 | 2.7 | 8.7 | Rev protein [human immunodeficiency virus 1] | 56 | 4 | 4.29 | 56 | 2 |
| gi23344577 | 99 | 10.6 | 9.4 | Protease [human immunodeficiency virus 1] | 12.12 | 5 | 4.36 | 12.12 | 2 |
| gi4324808 | 1437 | 161.9 | 8.3 | Gag-pol polyprotein [human immunodeficiency virus 1] | 2.51 | 7 | 4.05 | 1.6 | 2 |
| gi222533599 | 73 | 8.0 | 9.1 | Env C2V3 protein [human immunodeficiency virus 1] | 23.29 | 4 | 3.85 | 23.29 | 2 |
| gi71060450 | 206 | 23.7 | 6.3 | Negative factor [human immunodeficiency virus 1] | 4.85 | 4 | 3.84 | 4.85 | 2 |
| gi37935985 | 85 | 10.3 | 4.8 | Vpu protein [human immunodeficiency virus 1] | 11.76 | 4 | 3.84 | 11.76 | 2 |
| gi108860432 | 870 | 98.8 | 8.5 | gp160 [human immunodeficiency virus 1] | 3.33 | 2 | 3.74 | 3.33 | 2 |
| gi114801226 | 209 | 24.4 | 10.1 | Tat protein [human immunodeficiency virus 1] | 5.26 | 2 | 3.70 | 5.26 | 2 |
| gi22596451 | 341 | 38.6 | 8.0 | Truncated envelope glycoprotein [human immunodeficiency virus 1] | 3.81 | 4 | 3.68 | 3.81 | 2 |
| gi183200570 | 342 | 38.7 | 9.2 | Truncated pol protein [human immunodeficiency virus 1] | 3.51 | 2 | 3.68 | 3.51 | 2 |
| gi34786230 | 176 | 19.8 | 9.6 | gp120 protein [human immunodeficiency virus 1] | 10.8 | 3 | 3.60 | 10.8 | 3 |
| gi1002239 | 104 | 11.5 | 8.9 | Envelope glycoprotein, v3 region [human immunodeficiency virus 1] | 18.27 | 2 | 3.54 | 18.27 | 2 |
| gi77168129 | 95 | 11.3 | 7.6 | Vpr protein [human immunodeficiency virus 1] | 13.68 | 3 | 3.40 | 13.68 | 2 |
| gi222532593 | 129 | 14.7 | 8.4 | Gag p17 protein [human immunodeficiency virus 1] | 8.53 | 3 | 2.61 | 8.53 | 1 |
| gi219688191 | 132 | 14.9 | 10.2 | Matrix protein [human immunodeficiency virus 1] | 9.09 | 6 | 2.56 | 9.09 | 1 |
| gi255687141 | 288 | 32.1 | 7.7 | Integrase [human immunodeficiency virus 1] | 9.03 | 1 | 2.52 | 9.03 | 1 |
| gi222532161 | 132 | 15.0 | 9.5 | Gag p17 protein [human immunodeficiency virus 1] | 9.09 | 6 | 2.45 | 9.09 | 1 |
| gi37934078 | 573 | 65.0 | 9.0 | Gag-pol fusion polyprotein [human immunodeficiency virus 1] | 2.79 | 2 | 2.42 | 2.79 | 2 |
| gi405003 | 207 | 23.1 | 7.7 | gp120 [human immunodeficiency virus 1] | 12.08 | 1 | 2.41 | 12.08 | 1 |
| gi54792352 | 213 | 23.7 | 5.6 | Gag polyprotein [human immunodeficiency virus 1] | 9.39 | 2 | 2.34 | 9.39 | 2 |
| gi3885826 | 132 | 14.9 | 9.6 | p17 matrix [human immunodeficiency virus 1] | 11.36 | 2 | 2.31 | 11.36 | 1 |
Accession # = NCBI NR database, #AAs = total number of amino acids in the protein entry, MW = molecular weight of the protein in kDa, Description: description from the NCBI database, and Peptides = total number of unique peptides found.