Table 2.
Comparison of the number of recombination breakpoints and mean c-gene size based on seven different recombination detection methods implemented in RDP4 [62] that were applied to four target regions from Hobolth et al. [18].
| Method | Number of Recombination Breakpoints/Mean C-Gene Length (kb) | |||
|---|---|---|---|---|
| Target 1 | Target 106 | Target 121 | Target 122 | |
| RDP | 45/27.3 | 21/11.7 | 20/11.0 | 4/18.4 |
| GENECONV | 29/41.8 | 11/21.5 | 9/23.1 | 5/15.4 |
| MaxChi | 17/69.7 | 4/51.5 | 7/28.8 | 4/18.4 |
| Chimaera | 14/83.7 | 1/128.7 | 8/25.6 | 2/30.7 |
| BootScan | 36/33.9 | 14/17.2 | 16/13.6 | 9/9.2 |
| 3Seq | 26/46.5 | 9/25.7 | 8/25.6 | 2/30.7 |
| SiScan | 4/251.1 | 1/128.7 | 0/230.7 | 0/92.2 |
For each method and target region, the number of recombination breakpoints is shown before the slash and mean c-gene size (in kb) is shown after the slash.