TABLE 1B.
Transcriptomic Enrichment/Depletion Corresponds to Chromosomal Gain/Loss In EPN Cell Lines
| Gene Set Category | Location | Fold Enrichment | p Value | FDR |
|---|---|---|---|---|
| Cell line 811 | ||||
| Overexpressed Compared To Other Cell Lines (FC > 4; p < 0.05) | ||||
| Chromosome | 9 | 2.12 | 2.76E-20 | 2.26E-17 |
| Chromosome | 7 | 1.58 | 6.35E-09 | 5.21E-06 |
| Chromosome | 1 | 1.37 | 2.69E-07 | 2.21E-04 |
| Cytoband | 7q22.1 | 3.68 | 7.09E-06 | 0.0112 |
| Cytoband | 9p24.1 | 6.91 | 8.44E-06 | 0.0133 |
| cytoband | 9q32 | 5.40 | 2.61E-05 | 0.0411 |
| Under Expressed Compared To Other Cell Lines (FC > 4; p < 0.05) | ||||
| Chromosome | 6 | 1.51 | 5.36E-06 | 0.00440 |
| Cytoband | 6q21 | 4.85 | 6.15E-06 | 0.00932 |
| Cell line 928 | ||||
| Overexpressed Compared To Other Cell Lines (FC > 4; p < 0.05) | ||||
| Chromosome | 1 | 1.38 | 9.76E-06 | 0.00801 |
| Under Expressed Compared To Other Cell Lines (FC > 4; p < 0.05) | ||||
| Chromosome | 6 | 1.51 | 5.36E-06 | 0.00440 |
| Cytoband | 6q21 | 4.85 | 6.15E-06 | 0.00932 |
FC, fold change; FDR, false discovery rate.