. Author manuscript; available in PMC: 2018 Mar 26.

Published in final edited form as: J Ind Microbiol Biotechnol. 2015 Feb 27;42(5):745–757. doi: 10.1007/s10295-015-1599-4

Table 4.

Genes differentially expressed in the presence of Orange II

Function and locus tag	Gene name	COG category^a	Description of gene product	p-value	Putative location	Fold change
Message storage and processing
SAUSA300_0785		K	Acetyltransferase, GNAT family	0.0414	Cytoplasmic	−1.56
Cellular processes and signaling
SAUSA300_1531	phoH	T	Phosphate starvation-induced protein, PhoH	0.0211	Cytoplasmic	1.50
SAUSA300_1989	agrB	TK	Accessory gene regulatory protein B	0.0495	Cytoplasmic Membrane	−1.75
SAUSA300_2468		M	Acetyltransferase, GNAT family	0.0291	Unknown	−1.75
SAUSA300_1534		O	Conserved hypothetical protein	0.0328	Cytoplasmic Membrane	−1.68
SAUSA300_1317	msrA	O	Methionine-S-sulfoxide reductase	0.0162	Unknown	−1.71
Metabolism
SAUSA300_0381		C	Putative NAD(P)H-flavin oxidoreductase	0.0279	Cytoplasmic	1.92
SAUSA300_0855	mnhA	CP	Na(⁺)/H(⁺) antiporter subunit A	0.037	Cytoplasmic Membrane	−1.64
SAUSA300_1585		H	Conserved hypothetical protein	0.0337	Cytoplasmic	1.52
SAUSA300_2225	moaC	H	Molybdenum cofactor biosynthesis protein C	0.0327	Cytoplasmic	−1.53
SAUSA300_1125	acpP	IQ	Acyl carrier protein	0.0439	Cytoplasmic	−1.74
Poorly characterized
SAUSA300_0748		R	Conserved hypothetical protein	0.0128	Cytoplasmic	1.59
SAUSA300_0604		R	Hydrolase, alpha/beta hydrolase fold family	0.0461	Cytoplasmic	−2.07
SAUSA300_2590		R	Conserved hypothetical protein	0.0185	Cytoplasmic	−1.75
SAUSA300_0113		R	Immunoglobulin G binding protein A precursor	0.049	Cell wall	−1.62
SAUSA300_1249		S	Conserved hypothetical protein	0.039	Cytoplasmic Membrane	−1.62
SAUSA300_2142	asp23	S	Alkaline shock protein 23	0.0322	Unknown	1.87
SAUSA300_2257		S	Conserved hypothetical protein	0.0306	Unknown	1.71
Not in COGs
SAUSA300_1698		–	Conserved hypothetical protein	0.0211	Unknown	1.98
SAUSA300_1180		–	Conserved hypothetical protein	0.0174	Cytoplasmic	−1.51
SAUSA300_1985	sdrH	–	Serine-aspartate repeat family protein, SdrH	0.0355	Cell wall	1.84

– Not in COGs

The COGs functional categories are shown as follows: message and storage and processing [includes transcription (K)], cellular processes and signaling [includes signal transduction mechanisms (T), cell wall/membrane/envelope biogenesis (M), post-translational modification, protein turnover, chaperones (O)). Metabolism (includes energy production and conversion (C), coenzyme transport and metabolism (H), lipid transport and metabolism (I), inorganic ion transport and metabolism (P), secondary metabolite biosynthesis, transport and catabolism (Q)]. Poorly characterized [includes general function prediction only (R), function unknown (S)]