Table 3. Precision and sensitivity of Delly on the NA12878 sample, using various combinations of filters.

Delly deletion calling on NA12878
Filter	Sensitivity	Precision
No filter	0.92	0.17
AMYCNE filter	0.85	0.56
PASS filter	0.86	0.56
Combined AMYCNE and PASS filter	0.8	0.74