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. 2018 Mar 26;13(3):e0194527. doi: 10.1371/journal.pone.0194527

Fig 8. Conserved sequences of identified Neoromicia coronaviruses.

Fig 8

A) Region of the coronavirus ORF1ab (within the RdRp gene) targeted with the molecular detection assay. B) The coronavirus phylogenetic tree generated using the 605bp region was constructed in BEAST v1.8 using the GTR plus invariant sites and gamma distribution substitution model. The MCMC chain was set to 20,000,000 generations, sampled every 2000 steps, with a 10% burn-in of the first generated trees. Coronavirus genera and Betacoronavirus lineages are indicated on the right side of the sequences. GenBank accession numbers are shown with each sequence and coronaviruses detected in this study are indicated with a black circle. Posterior probability values of less than 50% were omitted.