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. 2018 Mar 20;9:511. doi: 10.3389/fmicb.2018.00511

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Copyright © 2018 Durand, Javerliat, Bes, Veyrieras, Guigon, Mugnier, Schicklin, Kaneko, Santiago-Allexant, Bouchiat, Martins-Simões, Laurent, Van Belkum, Vandenesch and Tristan.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Whole-genome sequencing for investigation of outbreaks in newborns related to the Geraldine clone MRSA. Neighbor-joining distance tree computed on the SNP between 41 Geraldine clone isolates. The leaf colors refer to the outbreak or isolate origin: red stands for Bordeaux (outbreak 1), green for Limoges (outbreak 2), blue for Epinal (outbreak 3), purple for sporadic cases, black for the Geraldine clone reference strain. Spa type information is provided near the strain identifier. The sample origin is labeled by a symbol (see legend). The dots indicate nodes supported by a bootstrap score over 80, based on 100 repetitions. The larger the dot, the higher the score. The scale represents the number of SNPs in 2,131 core genes.