Table 1.
Isolate | Namea | Origins | HAMBI/FBCC number | Mapped reads | Reads depth (x) | Reads coverage (%) | SNPs | InDels |
---|---|---|---|---|---|---|---|---|
03020 | S1 | Pernaja, Horslök | 2362 | 20,338,386 | 47.76 | 93.52 | 146,387 | 34,661 |
04121 | S2 | Artjärvi | 2365 | 20,914,722 | 49.13 | 92.97 | 140,039 | 34,113 |
93242 | S3 | Siilinjärvi | 2366 | 21,352,488 | 50.13 | 93.80 | 138,032 | 34,749 |
04051 | S4 | Mäntsälä | 2368 | 19,057,716 | 44.78 | 93.48 | 136,927 | 33,259 |
99055 | S5 | Kolari, Ylläs | 2361 | 18,024,412 | 42.34 | 93.60 | 144,819 | 34,027 |
91271 | S6 | Karkkila | 2363 | 20,342,018 | 47.78 | 95.21 | 94,638 | 29,362 |
99058 | S7 | Kittilä, Kukasjärvi | 2354 | 20,662,349 | 48.54 | 92.44 | 141,327 | 32,800 |
01039 | S8 | Hattula, Korkee | 2369 | 18,110,965 | 42.55 | 93.48 | 150,875 | 34,805 |
96160 | S9 | Askola | 2355 | 19,847,739 | 46.58 | 93.07 | 135,994 | 32,959 |
05029 | S10 | Kirkkonummi, Yövilä | 2364 | 19,240,310 | 45.20 | 93.86 | 143,212 | 33,761 |
99067 | S11 | Loppi, Launonen | 2360 | 21,492,624 | 50.51 | 93.13 | 143,010 | 34,019 |
94174 | S12 | Loimaa, Köyliön kylä | 2358 | 17,832,237 | 41.90 | 92.72 | 140,559 | 32,891 |
98038 | S13 | Suomusjärvi, Kettula | 2370 | 21,039,687 | 49.36 | 93.06 | 153,255 | 35,875 |
03014 | S14 | Kuhmoinen | 2367 | 19,767,540 | 46.42 | 92.79 | 143,762 | 33,717 |
96026 | S15 | Åland Islands | 2359 | – | – | – | – | – |
aReferred name in this study