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. 2018 Mar 27;19:220. doi: 10.1186/s12864-018-4610-4

Table 1.

Summary of H. parviporum isolates, mapping and variants relative to the reference isolate S15

Isolate Namea Origins HAMBI/FBCC number Mapped reads Reads depth (x) Reads coverage (%) SNPs InDels
03020 S1 Pernaja, Horslök 2362 20,338,386 47.76 93.52 146,387 34,661
04121 S2 Artjärvi 2365 20,914,722 49.13 92.97 140,039 34,113
93242 S3 Siilinjärvi 2366 21,352,488 50.13 93.80 138,032 34,749
04051 S4 Mäntsälä 2368 19,057,716 44.78 93.48 136,927 33,259
99055 S5 Kolari, Ylläs 2361 18,024,412 42.34 93.60 144,819 34,027
91271 S6 Karkkila 2363 20,342,018 47.78 95.21 94,638 29,362
99058 S7 Kittilä, Kukasjärvi 2354 20,662,349 48.54 92.44 141,327 32,800
01039 S8 Hattula, Korkee 2369 18,110,965 42.55 93.48 150,875 34,805
96160 S9 Askola 2355 19,847,739 46.58 93.07 135,994 32,959
05029 S10 Kirkkonummi, Yövilä 2364 19,240,310 45.20 93.86 143,212 33,761
99067 S11 Loppi, Launonen 2360 21,492,624 50.51 93.13 143,010 34,019
94174 S12 Loimaa, Köyliön kylä 2358 17,832,237 41.90 92.72 140,559 32,891
98038 S13 Suomusjärvi, Kettula 2370 21,039,687 49.36 93.06 153,255 35,875
03014 S14 Kuhmoinen 2367 19,767,540 46.42 92.79 143,762 33,717
96026 S15 Åland Islands 2359

aReferred name in this study