Table 1.
PRDM9 Submotif Summary.
| Submotif | Submotif Frequency in PRDM9 Alleles | Corresponding PRDM9 Allele | Source Population | Source Population Frequency |
|---|---|---|---|---|
| CCnCCnTnnCCnC | 34.5% (Berg et al. 2011) | Allele A | Human (CEU) | 84.6% (49.1% in YRI) (Schwartz et al. 2014) |
| CCnCnnTnnnCnTnnC | 34.5% (Berg et al. 2011) | Allele C | Human (YRI) | 13.4% (Schwartz et al. 2014) |
| AAnAAnCCC | 61.54% (Auton et al. 2012) | A1 (Auton et al. 2012) (Pan.p-1 [Schwartz et al. 2014]) | Bonobo | 62.5% (Schwartz et al. 2014) |
| CnnCCnAAnAA | 61.54% (Auton et al. 2012) | E1 (Auton et al. 2012) (Pan.t-3 [Schwartz et al. 2014]) | Eastern chimpanzee | 10.6% (Schwartz et al. 2014) |
| CnGnnAAnAnTT | 61.54% (Auton et al. 2012) | W6 (Auton et al. 2012) | Western chimpanzee | 25% (Auton et al. 2012) |
| AnTTnnAnTCnTCC | 66.7% (Schwartz et al. 2014) | Pt1 (Schwartz et al. 2014) | Pan troglydytes | 18.3% (Schwartz et al. 2014) |
| CCnAnnCCTC | 75.0% | Gg1 (Schwartz et al. 2014) | Gorilla | 42.9% |
| CTCnTCnTCnTC | 50.0% | Gg1 (see supplementary fig. S8, Supplementary Material online) | Gorilla | 42.9% |
Note.—Each submotif described is listed. Included information represents the PRDM9 allele from which each submotif was derived. Submotif frequency shows that for each, additional PRDM9 alleles contain a given submotif sequence. Additionally, the source population and the frequency are given. For values collected elsewhere, citations are included.