Table 2.

Hotspot Overlap Analysis.

	Panmap	Panmap (new)	Nigerian Chimpanzee	Bonobo	HapMap	Gorilla
Panmap	—	2167	77.7	46.9	11.3	27
Panmap (new)	35.6	—	92.9	35.9	18.1	22.8
Nigerian chimpanzee	2.15	3.3	—	39.9	9.6	12.3
Bonobo	2.33	2.87	2.59	—	13.2	9.2
HapMap	6.89	8.14	6.89	7.87	—	14.2
Gorilla	3.24	3.79	3.1	3.55	9.79	—

Note.—Above the diagonal values represent percent increase in hotspot overlap over null expectations in comparisons between populations. Below the diagonal values represent observed percent shared hotspots (compare to fig. 2). “Panmap” refers to hotspots called in P. troglodytes verus in Auton et al. (2012), while “Panmap (new)” refers to hotspots called from the same data using our method.