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. 2017 Jul 12;33(14):i110–i117. doi: 10.1093/bioinformatics/btx235

Table 1.

Statistics on the sparsity and density factor of the universal hitting sets generated by random ordering, the DOCKS universal hitting set and the lexicographic ordering

Ordering SP(Uk,w) |Uk,w|/σk df df,SP
% %
random 0.07 51 1.999 1.998
DOCKS 13.3 21 1.737 1.733
lexicographic 0.00 100 2.236 2.000

The computation is done with k = 10, w = 10 on a binary alphabet. The values for the random ordering are averages over 1000 different randomized orderings. df is the density factor and df,SP is the density factor estimated given the sparsity of the set by equation 3. The difference between these numbers is due to the imperfect nature of Hypotheses 2.