Table 2.
Statistics on the distribution of the distances between minimizers in Figure 2
| Ordering | df | distance | low sep. | |
|---|---|---|---|---|
| mean ± stdev | % | |||
| dbg | lexico. | 2.18 | 5.5(34) | 27 |
| random | 2.00 | 6.0(32) | 18 | |
| Minimap | 2.05 | 5.9(32) | 21 | |
| KMC2 | 1.97 | 6.1(32) | 18 | |
| UMD Ovl | 1.91 | 6.3(30) | 14 | |
| Kraken | 1.88 | 6.4(29) | 11 | |
| DOCKS | 1.75 | 6.9(25) | 4.6 | |
| human | lexico. | 2.34 | 5.1(34) | 33 |
| random | 2.02 | 6.0(32) | 19 | |
| Minimap | 2.09 | 5.8(33) | 22 | |
| KMC2 | 2.02 | 5.9(33) | 19 | |
| UMD Ovl | 1.97 | 6.1(31) | 17 | |
| Kraken | 1.93 | 6.2(30) | 13 | |
| DOCKS | 1.77 | 6.7(26) | 6.2 |
The table reports the density factor (df), the mean distance between minimizers (mean ± stdev) and the percentage of selected k-mers that are consecutive or separated by one base (low sep.). These were computed on a de Bruijn sequence (dbg) and on the human genome sequence (human).