Table 5.
Genome-scale prediction by DextMP
| Yeast | Human | X.laevis | |
|---|---|---|---|
| # Proteins | 6721 | 20 104 | 11 078 |
| Coverage | 96.73% | 98.06% | 30.54% |
| # MPs (%) (vote ≥ 3) | 2316 | 4781 | 600 |
| (34.46%) | (23.78%) | (5.42%) | |
| # MPs (%) (vote = 4) | 896 | 1682 | 279 |
| (13.33%) | (8.37%) | (2.51%) | |
| # known MPs | 23 | 45 | – |
| recall (vote ≥ 3) | 0.889 | 0.933 | – |
| recall (vote = 4) | 0.741 | 0.689 | – |
Coverage, the percentage of proteins in a genome that have both literature title and function descriptions, so that DextMP can run on them. Two prediction results are shown: the number of predicted MP proteins which are detected by three or more settings (vote ≥ 3) and the number of MPs detected by the all four settings unanimously (vote = 4). X.laevis does not have known MPs. The fraction in parentheses was computed for predicted MPs among all the proteins in the genome.