Skip to main content
. 2018 Mar 27;19:217. doi: 10.1186/s12864-018-4579-z

Table 2.

Characterization of high-quality BLAST matches obtained in comparison of striped red mullet genotype by sequencing SNP against NCBI database. We only retained SNPs located in genes with putative functions that are compatible with the hypothesis of salinity adaptive selection acting on encoded protein. R2 and P-value referred to the linear regression between SSSmax and minor allele frequencies of each SNP

SNP Detection method Uniprot Gene Protein General function R2 P-value
TP221669 PCadapt AIT82984 CYP7A1 Cholesterol 7-alpha-monooxygenase Bile acid and bile salt metabolism, bile salt export pump 0.045 0.079
TP106031 PCadapt ACO09386 MSRA Peptide methionine sulfoxide reductase Enzymatic restriction of methionine sulfoxyde to methionine 0.043 0.081
TP346795 LM ACV85622 SOCS2 Suppressor of cytokine signaling 2 Involved in JAK-STAT signaling cascades 0.009 0.218
TP61263 PCadapt, LM ACV85622 0.17 0.002