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. 2018 Mar 21;97(6):1261–1267.e4. doi: 10.1016/j.neuron.2018.02.010
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

penta-His primary antibody QIAGEN cat#34660; RRID: AB_2619735
Horse radish peroxidase-linked secondary antibody Thermo Fisher Scientific cat# 32230; RRID: AB_1965958
FLAG monoclonal antibody Cell Signaling 3916S; RRID: AB_10694611
Mouse monoclonal anti rat CD4 (clone OX-68) (for AVEXIS prey and bait protein normalization) Bio-Rad/AbD Serotec MCA1022R; RRID: AB_567282

Chemicals, Peptides, and Recombinant Proteins

Draxin peptide: GEVMPTLDMALFDWTDYEDLKP Genscript hDraxin-22
Nitrocefin CAS 41906-86-9 Merck Cat# 484400

Deposited Data

Crystal Structure of rDraxin/ rDCCIg1-Ig4 complex This study PDB: 5Z5K
Crystal structure of hNetrin-1/hDraxin-22 complex This study PDB: 6FKQ
SAXS experimental data This study SASBDB: SASDBZ6

Experimental Models: Cell Lines

HEK293T cells ATCC CRL-11268
COS Cells ATCC CRL-1651
FreeStyle 293-F Cells Thermo Fisher Scientific R79007

Oligonucleotides

5′ ATTTA GCGGCCGCC ATGGCAGGGTCCGTC 3′ This study rat Draxin forward primer signal sequence.
5′ GCCCC GAGCTC GATGTTGATGAAAGATCCC 3′ This study rat Draxin, reverse primer
5′ TGGAGCCACCCCCAGTTCGAGAAGGGCGGCT
CTCTTCATTTTGTGTCTGAACC 3′
This study rat DCC (residues 39-422) forward primer
5′ TTAAA GGTACC GGCGGCTGGAGCCACCCC
CAG 3′
This study rat DCC reverse primer
5′ AATAT GAGCTC GATGGCAGGCTTGGGG 3′ This study rat DCC reverse primer
5′ GCGGCCGCCACC ATGGCTGGGCCTGCCATC
CACACCGCTC 3′
(Gao et al., 2015) human Draxin forward primer with signal sequence
5′ GGCGCGCC GACGTTGATGAAGGATCCCT
GGTC 3′
(Gao et al., 2015) human Draxin full length reverse primer
5′ ATAAGAAT GCGGCCGC CATGGGAACCCTC 3′ This study common primer from pXLG to AVEXIS vector, forward primer
5′ A GGCGCGCC ATGGTGGTGGTGGTGGTG
GAGCTC 3′
This study common primer from pXLG to AVEXIS vector, reverse primer

Recombinant DNA

Plasmid: pXLG-rDraxin This study N/A
Plasmid: pXLG-hNetrin-1 (Finci et al., 2014) N/A
Plasmid: rDCC Ig1-Ig4 (Chen et al., 2013) N/A
Plasmid: AVEXIS-hDraxin-prey (Gao et al., 2015) Addgene #36148
Plasmid: AVEXIS-hDraxin-bait (Gao et al., 2015) Addgene #36149

Software and Algorithms

HKL2000 (Otwinowski and Minor, 1997) N/A
Phaser (Bunkóczi et al., 2013) N/A
Coot (Emsley et al., 2010) N/A
Phenix (Afonine et al., 2012) N/A
Molprobity (Chen et al., 2010) N/A
Pymol The PyMOL Molecular Graphics System, Version 1.7.x Schrödinger, LLC N/A
ESPRIPT (Robert and Gouet, 2014) N/A
MOSFLM (Battye et al., 2011) N/A
SCALA (Evans, 2006) N/A
MOLREP (Vagin and Teplyakov, 2010) N/A
REFMAC5 (Murshudov et al., 2011) N/A
CCP4 Suite (Winn et al., 2011) N/A
Prism GraphPad N/A
RADAVER Franke et al. (2012) https://www.embl-hamburg.de/biosaxs/download.html
PRIMUS/Qt Petoukhov et al. (2012) https://www.embl-hamburg.de/biosaxs/download.html
CRYSOL Petoukhov et al. (2012) https://www.embl-hamburg.de/biosaxs/download.html
DAMMIF Franke and Svergun, 2009 https://www.embl-hamburg.de/biosaxs/download.html
SASVIEW NSF DANSE http://www.sasview.org

Other

Mutagenesis kit Agilent Techologies #200521
Dulbecco’s modified eagle medium DMEM, Biochrom cat# F 0435
L-glutamine Biochrom cat# K 0293
fetal-bovine serum Biochrom cat# S 0615
Protease Inhibitor Cocktail tablets cOmplete ULTRA Tablets, Roche 05892791001
Ni-Sepharose Excel resin GE Healthcare cat# 17-3712-02
HiLoad 16/60 Superdex 75 column GE Healthcare #28-9893-33
Nickel-NTA agarose beads QIAGEN Cat No./ID: 30250