TABLE 2 .
List of available tools as freely accessible software packages for constraint-based modeling of microbial communities
| Strategy and tool | Tutorial(s) | Link | Reference |
|---|---|---|---|
| Compartment-based models | |||
| MMinte | Yes | https://github.com/mendessoares/MMinte | 61 |
| OptCom | No | http://www.maranasgroup.com/submission/OptCom.htm | 58 |
| Microbiome modeling toolbox | Yes | https://opencobra.github.io/cobratoolbox/ | 51 |
| Population-based models | |||
| COMETS | Yes | http://www.bu.edu/segrelab/comets/ | 67 |
| MCM | Yes | http://www.zoology.ubc.ca/MCM | 66 |
| DyMMM | No | https://sourceforge.net/p/dymmm | 64 |
| SteadyCom | No | https://github.com/maranasgroup/SteadyCom | 70 |
| Individual-based model | |||
| BacArena | Yes | https://github.com/euba/BacArena | 73 |