Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (Anthoceros agresitis) | Oxford | PMID: 26146510 | ||
| Strain, strain background (Ceratopteris richardii) | Hnn | PMID: 25886741 | ||
| Strain, strain background (Klebsormidium nitens) | NIES-2285 | National Institute of Environmental Studies (Japan) | ||
| Strain, strain background (Physcomitrella patens) | Grandsden | PMID: 18079367 | ||
| Strain, strain background (Spirogyra pratensis) | UTEX928 | The University of Texas at Austin | ||
| Strain, strain background (Marchantia polymorpha) | Tak-1 | PMID: 26020919 | ||
| Genetic reagent (M. polymorpha) | ncarf-2 | this paper | mutant of ncARF of M. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | ncarf-10 | this paper | mutant of ncARF of M. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | nciaa-6 | this paper | mutant of ncIAA ofM. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | nciaa-10 | this paper | mutant of ncIAA ofM. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | arf3ge1-1 | this paper | mutant of ARF3 ofM. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | arf3ge1-2 | this paper | mutant of ARF3 ofM. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | arf3ge2-1 | this paper | mutant of ARF3 ofM. polymorpha, Tak-1 background | |
| Genetic reagent (M. polymorpha) | arf1-4 | PMID: 29016901 | ||
| Recombinant DNA reagent | pMpGE_En03 | Addgene | 71535 | |
| Recombinant DNA reagent | pMpGE_010 | Addgene | 71536 | |
| Recombinant DNA reagent | pHKDW081 | this paper | entry vector containing sgRNA for nciaa | |
| Recombinant DNA reagent | pHKDW084 | this paper | entry vector containing sgRNA for ncarf | |
| Recombinant DNA reagent | pHKDW004 | this paper | entry vector containing sgRNA for arf3ge1 | |
| Recombinant DNA reagent | pHKDW005 | this paper | entry vector containing sgRNA for arf3ge2 | |
| Commercial assay or kit | TRIzol reagent | Thermo Fisher | 15596018 | |
| Commercial assay or kit | RNeasy Plant Mini kit | QIAGEN | 74904 | |
| Commercial assay or kit | RNase-free DNase I set | QIAGEN | 79254 | |
| Commercial assay or kit | iScript cDNA Synthesis Kit | Bio-Rad | 1708891 | |
| Commercial assay or kit | iQ SYBR Green Supermix | Bio-Rad | 1708886 | |
| Chemical compound, drug | Gamborg B5 medium | Duchefa Biochemie | G0209 | |
| Software, algorithm | BLAST + v2.2.28 | PMID: 20003500 | ||
| Software, algorithm | TransDecoder (ver2.0.1) | |||
| Software, algorithm | InterProScan database (ver5.19–58.0) | PMID: 24451626 | ||
| Software, algorithm | MAFFT | PMID: 23329690 | ||
| Software, algorithm | Phyutility (ver2.2.6) | PMID: 18227120 | ||
| Software, algorithm | PartitionFinder (ver1.1.1) | PMID: 22319168 | ||
| Software, algorithm | RAxML (ver8.1.20) | PMID: 24451623 | ||
| Software, algorithm | iTOL (ver3) | PMID: 27095192 | ||
| Software, algorithm | Trinity | PMID: 23845962 | ||
| Software, algorithm | Bowtie2 | PMID: 22388286 | ||
| Software, algorithm | Corset | PMID: 25063469 | ||
| Software, algorithm | DEseq2 | PMID: 25516281 | ||
| Software, algorithm | ClustalOmega | PMID: 21988835 | ||
| Software, algorithm | Espript | PMID: 24753421 | ||
| Software, algorithm | Modeller v9.17 | PMID: 27322406 | ||
| Software, algorithm | PyMOL | Schrödinger | ||
| Software, algorithm | Cytoscape | PMID: 14597658 |