Table 2. Top ten markers associated with Piscirickettsia salmonis resistance defined as DD and BIN in coho salmon, using wssGBLUP method.
| Ranking | Name | Chrc | Pos (BP)d | PEVe | Genesf |
|---|---|---|---|---|---|
| DD | |||||
| 1 | 24987_127 | 11a | 30525921 | 5.302 | PIK3AP1, TIAL1, PCBD1 |
| 2 | 6135_83 | 3 | 37136738 | 3.225 | NOXA1, UBAC1, KLHL20 |
| 3 | 7914_47 | 4 | 18281619 | 3.056 | LRP5, NTRK3, KLHL25 |
| 4 | 25096_120 | 11 | 33047788 | 2.744 | VA, INPP5A, CSAD |
| 5 | 34697_43 | 15 | 32261231 | 2.081 | CCDC153, KMT2A, LXN |
| 6 | 52922_94 | 25 | 656773 | 1.802 | NHLRC2, NRG3, LRRC4 |
| 7 | 41979_18 | 18 | 61818285 | 1.750 | ROBO2, KCNJ1, LCE |
| 8 | 22393_114 | 10 | 24996755 | 1.451 | SLC34A2, SH3RF1, FYB |
| 9 | 24553_70 | 11 | 19605173 | 1.294 | VOS41, CHMP5, FAM49B |
| 10 | 58185_41 | 29 | 22363292 | 1.211 | TSC1, GFI1B, STOM |
| BIN | |||||
| 1 | 58185_41 | 29a | 22363292 | 4.270 | PHPT1, GSN, GS |
| 2 | 66451_65 | 31ab | 12406 | 2.076 | PSMD14, CLDN10, CTSM |
| 3 | 68326_79 | 31b | 211676 | 2.073 | ROBO1, PIK3CB, KCNJ1 |
| 4 | 45949_127 | 21 | 17289066 | 2.073 | FLVCR1, VTA1, HIVEP2 |
| 5 | 36367_15 | 16 | 15005555 | 1.807 | SEC24D, KACNIP4, MYOZ2 |
| 6 | 6135_83 | 3 | 37136738 | 1.291 | NOXA1, UBAC1, KLHL20 |
| 7 | 37641_86 | 17 | 19982735 | 1.184 | NR0B2, HIVEP3, EDN2 |
| 8 | 23665_61 | 10 | 55479897 | 1.170 | HDAC5, CADM1, ICAM1 |
| 9 | 47149_112 | 22 | 17215562 | 1.133 | PPARA, CDKN1B, KCNQ1 |
| 10 | 18750_95 | 8 | 26751149 | 1.094 | GRID2, SMARCAD1, TSPAN3, |
a
Markers in common within the top ten along the four models.
b
Salmo salar used as reference specie.
c
Chromosome.
d
Position in coho salmon reference genome.
e
Percentage of Phenotypic variance.
f
Summary of the genes located within 1-Mb window are in supporting information Table S4.