Table 3. Significant genetic associations.
| Category | Trait | Marker | ALL PROVENANCES | SUBSETQD | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| p-value | R2 | p-value | R2 | |||||||
| Scenarios | Scen1 | GQ03709-C10.1.1133 | 1.55E-05 | * | 0.33 | |||||
| Scen2 | GQ03204-K15.1.405 | 5.69E-05 | + | 0.36 | ||||||
| Drought-2000 | Rc00 | ss538948434 | 1.30E-05 | * | 0.29 | |||||
| a | c89584_g2_i1_197 | 2.28E-05 | * | 0.14 | ||||||
| PGLM2-0082 | 2.87E-05 | * | 0.14 | |||||||
| Rs00 | WS-2.0-GQ02827.B7-M03.1-1062 | 1.90E-06 | ** | 0.15 | 6.63E-06 | * | 0.26 | |||
| NODE-12228-length-276-cov-134.847824-162 | 1.08E-05 | * | 0.15 | |||||||
| b | WS-2.0-GQ03417.B7-O19.1-1215 | S | 1.34E-05 | * | 0.15 | |||||
| rRs00 | GQ03812-F08.1.123 | S | 2.54E-07 | *** | 0.36 | |||||
| b | WS-2.0-GQ03417.B7-O19.1-1215 | S | 1.34E-05 | * | 0.29 | |||||
| Drought-2003 | Rt03 | c | MA_475589g0010-111-[C_T] | S | 2.25E-11 | *** | 0.31 | |||
| ss538948838 | S | 3.64E-07 | *** | 0.19 | ||||||
| a | c89584_g2_i1_197 | 1.42E-05 | * | 0.14 | ||||||
| GQ03512-P11.2.1194 | 3.45E-05 | + | 0.13 | |||||||
| GQ03013-D24.3.551 | 5.74E-05 | + | 0.13 | |||||||
| Rc03 | ss538944271 | 4.78E-05 | + | 0.26 | ||||||
| GQ0197-K07.1.447 | S | 1.91E-06 | ** | 0.17 | ||||||
| GQ0197-K07.1.345 | S | 1.91E-06 | ** | 0.17 | ||||||
| GQ0068-K02.1.644 | S | 1.58E-05 | * | 0.14 | ||||||
| GQ02904-L21.2.961 | 3.76E-05 | + | 0.13 | |||||||
| Rs03 | c | MA_475589g0010-111-[C_T] | S | 1.81E-05 | * | 0.15 | ||||
| Climate-growth | CorJunT | GQ03204-O22.1.645 | 1.91E-05 | * | 0.25 | |||||
| CorJunT | FCL808Contig2-402 | 3.09E-05 | + | 0.24 | ||||||
| CorJunT | MA_10289324g0010-1023-[G_A] | 4.26E-05 | + | 0.23 | ||||||
| Wood Properties | RW | d | 08Pg07115c | 3.23E-06 | ** | 0.29 | ||||
| RWt | d | 08Pg07115c | 3.98E-06 | ** | 0.28 | |||||
| EW | d | 08Pg07115c | 5.19E-06 | ** | 0.27 | |||||
| LW | GQ03709-C10.1.483 | 7.97E-09 | *** | 0.42 | ||||||
| GQ03121-E24.1.494 | S | 9.84E-09 | *** | 0.42 | ||||||
| PaPHYN-RI420 | S | 1.54E-08 | *** | 0.41 | ||||||
| GQ03205-D16.1.1410 | S | 1.73E-08 | *** | 0.41 | ||||||
| GQ00410.B3-M23.4-2998 | S | 1.12E-08 | *** | 0.24 | 2.64E-08 | *** | 0.43 | |||
| RD | e | WS-2.0-GQ0036.TB-K03.1-397 | 5.32E-05 | + | 0.25 | |||||
| RDt | e | WS-2.0-GQ0036.TB-K03.1-397 | 2.43E-05 | * | 0.26 | |||||
| EDt | 00930-O17-366 | 4.43E-05 | + | 0.11 | ||||||
The p-value threshold was corrected with the standard Bonferroni procedure resulting into the following corrected p-values for a given significance level ⍺: All provenances (⍺ = ***0.001: P < 5.83 · 10-7; ⍺ = **0.01: P < 5.83 · 10-6; ⍺ = *0.05: P < 2.92 · 10-5; ⍺ = +0.1: P < 5.83 · 10-5); SubsetQD (⍺ = ***0.001: P < 5.85 · 10-7; ⍺ = **0.01: P < 5.85 · 10-6; ⍺ = *0.05: P < 2.93 · 10-5; ⍺ = +0.1: P < 5.86 · 10-5).
a,b,c,d,e
SNP significantly associated to several traits.
S: SNP significantly associated because of a single individual with an extreme trait value.