Table 3. Top ten markers associated with viral load.
| SNP ID | LG (position cM) | LG nearest marker (position cM) | Scaffold (position bp) | A1 | A2 | GenABEL | EMMAX | PVE | Gene |
|---|---|---|---|---|---|---|---|---|---|
| AX-169203956 | LG 8 (0) | — | scaffold501 (742,989) | C | T | 6.54E-07* | 3.47E-09* | 0.037 | FBN2 |
| AX-169210119 | Unassigned | LG 6 (29.41) | scaffold198 (583,825) | T | C | 9.09E-07* | 9.33E-08* | 0.0349 | RANBPM |
| AX-169172429 | Unassigned | LG 4 (57.01) | scaffold713 (269,794) | T | G | 3.72E-06 | 9.36E-07* | 0.0314 | B3GALNT2 |
| AX-169192982 | Unassigned | LG 6 (43.46) | scaffold1093 (208,087) | C | T | 9.61E-06 | 1.54E-07* | 0.0284 | SKI |
| AX-169167580 | Unassigned | LG 6 (36.95) | scaffold1763 (82,048) | A | G | 1.65E-05 | 8.91E-07* | 0.0277 | CLEC16A |
| AX-169199878 | Unassigned | LG 8 (71.91) | scaffold536 (135,453) | T | C | 2.11E-05 | 1.42E-06* | 0.0269 | TNR |
| AX-169203386 | Unassigned | LG 10 (52.04) | scaffold1301 (188,626) | C | T | 2.27E-05 | 1.13E-06* | 0.0266 | RAPGEF2 |
| AX-169196070 | Unassigned | LG 1 (57.32) | scaffold433 (1,082,890) | G | A | 3.62E-05 | 1.69E-06* | 0.0261 | CARS |
| AX-169199276 | LG 7 (6.68) | — | scaffold128 (550,765) | G | T | 3.70E-05 | 8.44E-07* | 0.0243 | SMARCA5 |
| AX-169194053 | LG 4 (19.39) | — | scaffold728 (174,857) | G | T | 0.000148 | 2.22E-06* | 0.0209 | TNIK |
| AX-169193982 | LG 1 (47.02) | — | scaffold41452 (35,018) | A | G | 6.79E-05 | 6.03E-06 | 0.0243 | U/Pa |
| AX-169192459 | Unassigned | LG 1 (22.66) | scaffold447 (373,487) | G | A | 7.28E-05 | 9.00E-06 | 0.0232 | SCARF2 |
*
Genome-wide significant (P < 0.05) markers. A1 & A2, major and minor allele. PVE, phenotypic variation explained by the SNP. a U/P indicates uncharacterized protein. The physical position of the SNPs on the Scaffolds are given according to the Pacific oyster reference assembly (Genbank ID GCA_000297895.1).