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. 2018 Feb 23;8(4):1347–1365. doi: 10.1534/g3.117.300454

Table 5. Maize USP data set. Mean Pearson’s correlation (50 partitions) of each environment for random cross-validation CV2, for the multi-environment models, main genotypic effect model (MM), single variance G×E deviation model (MDs), environment-specific variance G×E deviation model (MDe), multi-environment unstructured covariance models (MUC and MUCf) with two kernels, GBLUP (GB) and Gaussian kernel (GK) for grain yield with the proposed random effect l and without the random effect l (standard deviation in parentheses).

Proposed models with random effects l and f
Environment* MMl-GK MMl-GB MDsl-GK MDsl-GB MDel-GK MDel-GB MUCf-GK MUCf-GB
P-LN 0.525 (0.07) 0.521 (0.06) 0.545 (0.07) 0.546 (0.07) 0.549 (0.05) 0.544 (0.08) 0.563 (0.06) 0.564 (0.06)
P-IN 0.575 (0.05) 0.566 (0.06) 0.593 (0.05) 0.591 (0.06) 0.594 (0.05) 0.595 (0.04) 0.592 (0.06) 0.597 (0.05)
A-LN 0.493 (0.06) 0.493 (0.07) 0.508 (0.06) 0.515 (0.06) 0.509 (0.05) 0.503 (0.05) 0.526 (0.05) 0.515 (0.06)
A-IN 0.603 (0.05) 0.599 (0.06) 0.627 (0.05) 0.629 (0.06) 0.631 (0.05) 0.627 (0.06) 0.630 (0.05) 0.618 (0.06)
Proposed models without random effects l and f
Environment MM-GK MM-GB MDs-GK MDs-GB MDe-GK MDe-GB MUC-GK MUC-GB
P-LN 0.50 (0.06) 0.315 (0.06) 0.524 (0.07) 0.325 (0.06) 0.52 (0.06) 0.32 (0.05) 0.536 (0.07) 0.318 (0.06)
P-IN 0.53 (0.05) 0.358 (0.06) 0.554 (0.05) 0.368 (0.05) 0.56 (0.05) 0.365 (0.06) 0.563 (0.05) 0.361 (0.07)
A-LN 0.463 (0.07) 0.332 (0.07) 0.476 (0.06) 0.334 (0.07) 0.478 (0.06) 0.33 (0.07) 0.496 (0.06) 0.333 (0.06)
A-IN 0.584 (0.06) 0.438 (0.07) 0.612 (0.05) 0.447 (0.05) 0.607 (0.04) 0.445 (0.06) 0.61 (0.05) 0.439 (0.06)
*

Environments are: Anhumas ideal N (A-IN), Anhumas low N (A-LN), Piracicaba ideal N (P-IN) and Piracicaba low N (P-LN).