Table 3.

Clinical isolates of C. auris included in this study

Isolate ID	Sequencing technology	Isolate date	Site	Origin
15B5	MinION, Illumina	19/10/2015	Vascath site	Patient
15B6	Illumina	22/10/2015	Swan ganz tip	Patient
15B10	Illumina	28/12/2015	Groin swab	Patient
16B12	Illumina	04/01/2016	Axilla	Patient
16B13	Illumina	11/01/2016	Femoral pulse index continuous cardiac output catheter site	Patient
16I29b	Illumina	18/01/2016	Bed	Environment
16I29a	Illumina	18/01/2016	Bed window trolley	Environment
16B18	Illumina	01/02/2016	Central venous pressure catheter tip in arm	Patient
16B15a	MinION, Illumina	06/02/2016	Blood culture	Patient D
16I17	Illumina	08/02/2016	Screen	Patient
16B20	MinION, Illumina	16/02/2016	Blood culture	Patient
16B16	Illumina	21/02/2016	Urine catheter	Patient
16B21	MinION, Illumina	22/02/2016	Axilla swab	Patient
16B22a	Illumina	27/02/2016	Axilla swab	Patient A
16B24a	Illumina	07/03/2016	Sputum	Patient C
16B22b	Illumina	09/03/2016	Femoral central venous pressure catheter	Patient A
16B15b	Illumina	09/03/2016	Central venous pressure tip	Patient D
16B24b	Illumina	12/03/2016	Pacing wire	Patient
16B25	MinION, Illumina	13/03/2016	Extracorporeal membrane oxygenation site	Patient C
16I27a	Illumina	14/03/2016	Screen	Patient B
16B26	Illumina	14/03/2016	Extracorporeal membrane oxygenation site	Patient
16B27b	Illumina	15/03/2016	Blood culture	Patient B
16I30	Illumina	21/03/2016	Screen	Patient
16I33	Illumina	16/06/2016	Groin	Patient
16B31	Illumina	16/10/2016	Central venous pressure line site	Patient
16B30	Illumina	17/10/2016	Groin	Patient
16I34	Illumina	23/10/2016	Axilla swab	Patient