TABLE 2 .
Hypervariable BamA L6 sequences in P. aeruginosa isolates and strains used in the test panel
|
Hypervariable loop L6
amino acid sequencea |
Relative frequency (%) of sequence among: |
Test panel strains susceptible to: |
P. aeruginosa
isolates encoding: |
|||
|---|---|---|---|---|---|---|
| P. aeruginosa isolates | Test panel | PyoL1 | PyoL2 | PyoL1 | PyoL2 | |
| PRSTPSRAYKDGKIIPGPDER GRYTDPDQDPEAFGG |
37.3 | 33.75 | 0/27 | 0/27 | 3/12 | 11/18 |
| PRSTPSVARNPDGTPMKNQG PDSKGRYTDPDQDPEAFGG |
18.2 | 26.25 | 21/21 | 0/21 | 0/12 | 7/18 |
| PRSTPSIARDANGKQIPGPDS QGRYTDPDQDPEAFGG |
2.3 | 1.25 | 0/1 | 1/1 | 0/12 | 0/18 |
| PRSTPSVARDG(N/K)GNQIVG PDSKGRYTDPDQDPEAFGG |
20.8 | 15.0 | 0/12 | 11/12 | 9/12 | 0/18 |
| PRSTPSRGEAEGGRPGTVRDP DQDPEAFGG |
17.2 | 18.75 | 0/15 | 0/15 | 0/12 | 0/18 |
| Other | 4.2 | 5.0 | 0/4 | 0/4 | 0/12 | 0/18 |
a
Residues shown in boldface italics indicate the hypervariable sequence; nonpolymorphic (conserved) residues that are part of L6 are shown in lightface.