Table 2.
Results of SNP calling by MTA-seq with 443 SNP markers and whole-genome re-sequencing.
| Accession | Number of obtained reads | Number of reads on 443 SNPs | Theoretical genotype | Number of called genotypes and its rate | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | % | AB | % | BB | % | NC | % | ||||
| MTA-SEQ WITH 443 SNP MARKERS | |||||||||||
| Bd21 | 7,503,503 | 3,161,811 | AA | 422 | 95.3 | 11 | 2.5 | 0 | 0.0 | 10 | 2.3 |
| Bd1-1 | 7,128,438 | 3,628,181 | BB | 0 | 0.0 | 2 | 0.5 | 425 | 95.9 | 16 | 3.6 |
| Bd3-1 | 6,109,749 | 2,482,031 | BB | 1 | 0.2 | 4 | 0.9 | 425 | 95.9 | 13 | 2.9 |
| Bd21-3 | 5,613,548 | 2,194,140 | BB | 0 | 0.0 | 2 | 0.5 | 429 | 96.8 | 12 | 2.7 |
| Bd30-1 | 7,095,176 | 3,304,472 | BB | 0 | 0.0 | 5 | 1.1 | 426 | 96.2 | 12 | 2.7 |
| Koz-1 | 5,597,679 | 2,306,393 | BB | 0 | 0.0 | 4 | 0.9 | 427 | 96.4 | 12 | 2.7 |
| Koz-3 | 5,650,458 | 2,326,367 | BB | 0 | 0.0 | 5 | 1.1 | 426 | 96.2 | 12 | 2.7 |
| Koz-4 | 5,587,759 | 2,407,609 | BB | 0 | 0.0 | 4 | 0.9 | 432 | 97.5 | 7 | 1.6 |
| Bd21 × Bd3-1 | 6,502,896 | 2,921,015 | AB | 6 | 1.4 | 425 | 95.9 | 4 | 0.9 | 8 | 1.8 |
| WHOLE-GENOME RE-SEQUENCING | |||||||||||
| Bd3-1 (DRR124340) | 95,612,960 | 27,713 | BB | 1 | 0.2 | 1 | 0.2 | 440 | 99.3 | 1 | 0.2 |
| Bd21-3 (DRR124339) | 83,270,974 | 82,342 | BB | 0 | 0.0 | 16 | 3.6 | 427 | 96.4 | 0 | 0.0 |