T-RFLP |
terminal restriction fragment length polymorphism |
PLFA |
phospholipid fatty acid |
OTU |
operational taxonomic unit |
NPR |
rhizosphere soil from the newly planted plants |
MUR |
rhizosphere soil from monocultured uninfected plants |
MIR |
rhizosphere soil from monocultured infected plants |
NPP |
rhizoplane soil from the newly planted plants |
MUP |
rhizoplane soil from monocultured uninfected plants |
MIP |
rhizoplane soil from monocultured infected plants |
PCoA |
principal coordinate analysis |
UPGMA |
unweighted pair-group method with arithmetic means |
WUF |
weighted UniFrac metric |
UUF |
unweighted UniFrac metric |
NMDS |
non-metric multidimensional scaling |
ANOVA |
one-way analysis of variance |
ANOSIM |
analysis of similarity |
LDA |
linear discriminant analysis |
LEfSe |
linear discriminant analysis effect size |
PDA |
potato-dextrose agar |