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. Author manuscript; available in PMC: 2018 Mar 30.
Published in final edited form as: Nat Protoc. 2017 May 18;12(6):1229–1244. doi: 10.1038/nprot.2017.034

Item Parameter Value

LC pump Loading pump (μl/min) 5
Separation (Nanoflow pump) (μl/min) 0.25
LC gradient Linear gradient of 4-50% ACN (0.1% TFA) (min) 70
MS1 MS1 mass range (Da) 400-1,800
MS2 Collision energy (%) 29
Isolation width (m/z) 2
Activation time (ms) 0.2
High-energy collision dissociation (HCD) On
Repeat count (dynamic exclusion) 2
Repeat duration (dynamic exclusion) (s) 25
Exclusion list size (dynamic exclusion) 500
Exclusion duration (dynamic exclusion) (s) 5