Skip to main content
. 2018 Feb 20;115(10):E2183–E2192. doi: 10.1073/pnas.1714530115

Fig. 2.

Fig. 2.

Genome-scale probe discovery with OligoMiner. (A) Description of three parameter sets used for genome-scale mining runs. (B–E) Box plots displaying overall mining times and rates for UM (B and C) and LDM (D and E). Each chromosome was run separately and reported, resulting in 24 data points per parameter setting and a total of 72 data points per plot. The mean rate or time for all 72 data points is displayed beneath each box plot. (F and G) Swarm plots displaying changes in probe density (i.e., probes per kilobase) that occurred over the course of the pipeline in UM (F) and LDM (G). bP, blockParse; kF, kmerFilter; oC, outputClean. (H) Swarm plot displaying probe densities in the C. elegans (ce11), D. melanogaster (dm6), zebrafish (danRer10), human (hg38), mouse (mm10), and A. thaliana (tair10) genome assemblies after whole-genome mining using LDM and kmerFilter.