Table 3.
SSR, SNP, distorted markers, and bin markers mapped to each LG for the three diploid rose population as well as the integrated consensus map
| Population | |||||
|---|---|---|---|---|---|
| LG | Marker statistics | J14-3×LC | J14-3×VS | OB×RF | ICD |
| LG1 | SSR no. | 3 | 2 | 4 | 4 |
| SNP no. | 186 | 159 | 99 | 344 | |
| Distorted marker (p < 0.05) | 0 | 60 | 48 | — | |
| Bin marker no. | 38 | 39 | 48 | 93 | |
| Total | 189 | 161 | 103 | 348 | |
| LG2 | SSR no. | 1 | 1 | 2 | 2 |
| SNP no. | 270 | 296 | 367 | 751 | |
| Distorted marker (p < 0.05) | 81 | 7 | 53 | — | |
| Bin marker no. | 60 | 81 | 76 | 161 | |
| Total | 271 | 297 | 369 | 753 | |
| LG3 | SSR no. | 2 | 2 | 4 | 4 |
| SNP no. | 194 | 121 | 80 | 336 | |
| Distorted marker (p < 0.05) | 22 | 27 | 14 | — | |
| Bin marker no. | 49 | 43 | 31 | 91 | |
| Total | 196 | 123 | 84 | 340 | |
| LG4 | SSR no. | 1 | 1 | 1 | 1 |
| SNP no. | 198 | 223 | 220 | 519 | |
| Distorted marker (p < 0.05) | 32 | 4 | 0 | — | |
| Bin marker no. | 40 | 49 | 61 | 120 | |
| Total | 199 | 224 | 221 | 520 | |
| LG5 | SSR no. | 2 | 2 | 1 | 2 |
| SNP no. | 273 | 224 | 302 | 562 | |
| Distorted marker (p < 0.05) | 29 | 60 | 0 | — | |
| Bin marker no. | 50 | 56 | 64 | 121 | |
| Total | 275 | 226 | 303 | 564 | |
| LG6 | SSR no. | 1 | 1 | 1 | 1 |
| SNP no. | 219 | 139 | 224 | 471 | |
| Distorted marker (p < 0.05) | 52 | 10 | 87 | — | |
| Bin marker no. | 45 | 39 | 61 | 109 | |
| Total | 220 | 140 | 225 | 472 | |
| LG7 | SSR no. | 4 | 4 | 5 | 6 |
| SNP no. | 227 | 259 | 241 | 524 | |
| Distorted marker (p < 0.05) | 0 | 32 | 24 | — | |
| Bin marker no. | 54 | 62 | 45 | 125 | |
| Total | 231 | 263 | 246 | 530 | |
| Overall | SSR no. | 14 | 13 | 18 | 20 |
| SNP no. | 1567 | 1421 | 1533 | 3507 | |
| Distorted marker (p < 0.05) | 216 | 200 | 226 | — | |
| Bin marker no. | 336 | 369 | 386 | 820 | |
| Total | 1581 | 1434 | 1551 | 3527 | |
Marker distortion was based on a χ2 test (p < 0.05); LGs having more than 50 highly distorted markers are shown in bold for each population; “—” indicates distortion is not available for the consensus map.