Table 1.
The calculated results for the 2W mechanism and the corresponding observed values
System | ∆g‡1 | ∆Gо1 | ∆g‡cal | ∆g‡exp |
Water | 27.0 | 26.0 | 27.0 | 27.0* |
EF-Tu′(wild)2W | 14.4 | 12.8 | 13.8 | <14.0† |
EF-Tu′(H84NP)2W | 17.0 | 16.1 | 17.1 | — |
EF-Tu′(H84A)2W | 21.8 | 20.4 | 21.4 | 21.2† |
EF-Tu′(H84Q)2W | 18.7 | 17.5 | 18.5 | ∼18.4§ |
EF-Tu′(D21A)2W | 18.6 | 17.3 | 18.3 | 18.4§ |
EF-G′(wild)2W | 14.6 | 13.2 | 14.2 | 14.1¶ |
EF-G′(H87A)2W | 25.0 | 23.7 | 24.7 | >22# |
∆g‡1 and ∆g‡cal are the calculated activation free energy for the nucleophilic attack step and the total reaction, respectively. ∆Gо1 is the reaction free energy of the first step. ∆g‡exp is the activation free energy obtained from the experimentally determined rate of the hydrolysis. 2W denotes the two-water mechanism for GTP hydrolysis.
From ref. 33.
From ref. 1.
From ref. 21.
From ref. 34.
From ref. 35.