Table 1.
Variant information for ATRX and TP53 germline variants, which were present in both cases
Gene | Chromosome | HGVS coding DNA reference | HGVS protein reference | Variant type | Predicted effect | dbSNP/dbVar ID | Genotype | ClinVar ID |
---|---|---|---|---|---|---|---|---|
ATRX | Chr X:76856021 | NM_000489:exon23: c.5579A>G | NM_000489:exon23: p.N1860S (p.Asn1860Ser) | Nonsynonymous SNV | Asn1860Ser | rs45439799 | Heterozygous | VCV000011724.1 |
TP53 | Chr 17:7577548 | NM_000546:exon7:c.733G>A | NM_000546:exon7:p.G245S (p.Gly245Ser) | Nonsynonymous SNV | Gly245Ser | rs28934575 | Heterozygous | VCV000012365.2 |
HGVS, Human Genome Variation Society; dbSNP, the Single Nucleotide Polymorphism database; dbVar the Database of Genomic Structural Variation.