Table 5.

Virulence genes identified by STM and Tn-Seq

PMI number	Gene name	Isolate	STM of ascending UTI				CAUTI	Polymicrobial CAUTI
Reference				155	103	154	124	124
PMI0012	nhaR	4B6			U, K, O
PMI0020	carA	D4-8		U, B, K			B, K
PMI0030	exbD	7A1			U, B, K, O		B
PMI0283	zapE2	9C6			K
PMI0565	sdhC	10E3			U, B, K, O
PMI0589	aroG	G1-38		U, B, K
PMI0711	serC	G4-12		U, O			B, K
PMI0842		D6-33		U, B, K			K
PMI1000		8H4			U, O		K
PMI1045	arnA	G5-30		U, B, K		B, K
PMI1184		16F1			K
PMI1193		40A6			U, B, K, O
PMI1421	ppsA	17A4			B, K, O		B, K
PMI1448		6F6			U, O
PMI1546	guaB	5F1			U, B, K, O	B, K
PMI1598	yidA	12E4			U
PMI1607	sdaA	15C3			U	K	K
PMI1630	fliF	8A6			B, K	B	B, K
PMI1651	flgE	21B2			K		B, K
		37D5			U, B, O
PMI1667	cheW	E6-43		U, B, K			B, K
PMI1761	nuoB	15A6			U, B, K, O
PMI1874		E5-36		U, B, K			K
PMI2014		32C4			B
PMI2046	aceE	8B5			B, K, O
PMI2259	metN	23D5			U, K, O	B, K
PMI2332	surA	11C4			U, B, K, O	K	K
		32E1			B
PMI2342	sufI	38E2			K, O		K
PMI2345	parE	C6-15		U, B, K
PMI2378	cbbC	11G3			U, K, O		B, K
PMI2575		36D2			B, O
PMI2605	nrpG	A1-8		U, K, O			K
PMI2760	edd	11D4			U, K		B, K
PMI2823	ppiA	6D1			U, K, O
PMI2828	dsbA	F4-37		U, B, K		B, K
PMI2893	pstS	H4-34		U, B, K		B, K
PMI2894	pstC	G1-43		U, B, K		B, K
PMI3001		4A3			U
		11A4			U, K, O
PMI3021	mrcA	B6-23		U, B, K		K
PMI3053	asnC	E6-41		U, B, K		B, K
PMI3190	cpsF	11B2			B, K, O		K
		20C4			U, B, K, O
PMI3295	hdfR	D5-9		U, O		K
		C1-18		B, O
PMI3329	hemY	B2-9		U		B
PMI3333	cyaA	20E1			U, B, K, O	K
PMI3359		13D1			U, O
PMI3390		F6-34		U, B, K
		A3-39		U, B, K
PMI3441		B2	P
PMI3451	nrdD	D6-39		B, K, O			B, K
PMI3623	dusBC	F1-29		U, B, K		B, K	B,K
PMI3645	rapZ	B5	U, B, K				K
PMI3687	ureF	B6-40		U, B, K			K
PMI3692		D6-26		U, B, K
PMI3700		D1-30		U, B, K		B, K
PMI3705		1F6			U, K, O		B, K
PMIP09	pilX4	C4-41		B, K, O		K	K
		A5-34		U, K, O
		B4-38		K

P, primary screen; U, urine; B, bladder; K, kidney; O, attenuated overall