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. 2018 Apr 2;13(4):e0195408. doi: 10.1371/journal.pone.0195408

Table 4. QTL detected in the female (TGdL) and male (MB) mapping population for time of leaf budburst (lb).

LG QTL 2012 2013
GW cM LOCUS LOD PV Additive GW cM LOCUS LOD PV Additive
01 lb_TGdL_01 (A) 3.3 - - - - - 3.1 20.8 Corav1231 6.5 6.3 -0.54
01 lb_TGdL_01 (B) 81.8 00364_36890 5.3 5.7 0.72 - - - - -
02 lb_TGdL_02 19.2 AJ417975b 23.7 31.4 -1.72 19.2 AJ417975b 32.6 43.2 -1.43
08 lb_TGdL_08 57.1 03460_19364 4.1 4.4 -0.65 54.6 00542_41715 4.5 4.3 -0.45
10a lb_TGdL_10a 17.1 00361_58830 4.1 4.4 -0.65 - - - - -
11 lb_TGdL_11 - - - - - 51.4 07109_9866 4.1 3.9 0.43
02 lb_MB_02 (A) 3.1 - - - - - 3.1 44.5 01881_28048 4.0 7.7 0.59
02 lb_MB_02 (B) 82.1 08587_2729 3.6 7.0 0.80 - - - - -
04 lb_MB_04 - - - - - - - - - -
07 lb_MB_07 64.5 00002_249778 3.3 6.3 0.76 57.1 04949_1954 3.2 6.2 0.53
LG QTL 2014 2015
GW cM LOCUS LOD PV Additive GW cM LOCUS LOD PV Additive
01 lb_TGdL_01 (A) 3.1 29.1 02104_20297 3.6 3.2 -0.46 3.0 20.8 Corav1231 5.8 6.0 -0.65
01 lb_TGdL_01 (B) - - - - - - - - - -
02 lb_TGdL_02 19.2 AJ417975b 35.9 46.3 -1.74 19.2 AJ417975b 25.5 33.2 -1.53
08 lb_TGdL_08 57.1 03460_19364 4.7 4.2 -0.53 54.4 10607_3880 3.9 4.0 -0.53
10a lb_TGdL_10a - - - - - 22.1 00502_20042 4.6 4.7 -0.58
11 lb_TGdL_11 - - - - - - - - - -
02 lb_MB_02 (A) 3.2 44.5 01881_28048 3.3 4.1 0.51 3.0 44.5 01881_28048 3.3 6.4 0.67
02 lb_MB_02 (B) - - - - - - - - - -
04 lb_MB_04 - - - - - - - - - -
07 lb_MB_07 57.1 04949_1954 3.8 3.6 0.48 58.0 21507_1735 3.1 3.1 0.65
LG QTL 2016
GW cM LOCUS LOD PV Additive
01 lb_TGdL_01 (A) 3.2 - - - - -
01 lb_TGdL_01 (B) 79.5 KG857 5.7 4.3 0.59
02 lb_TGdL_02 19.2 AJ417975b 45.3 54.6 -2.10
08 lb_TGdL_08 - - - - -
10a lb_TGdL_10a 22.1 00502_20042 8.2 6.4 -0.72
11 lb_TGdL_11 - - - - -
02 lb_MB_02 (A) 3.1 44.7 17921_4014 3.1 4.0 0.57
02 lb_MB_02 (B) - - - - -
04 lb_MB_04 17.3 04654_12942 3.6 4.9 0.64
07 lb_MB_07 57.1 04949_1954 3.5 6.8 0.74

Each QTL name is given by the abbreviated acronym of the trait followed by the LG number. The table indicates genome-wide LOD Thresholds (GW) as determined by a permutation test at p ≤ 0.05, the closest linked marker (Locus) and their map position in cM, the estimated LODs at the QTL peak (LOD), the proportions (%) of the total phenotypic variance (PV) explained and the parental allelic contribution (Additive).