Table 2.
Results of de novo genome assembly with SPAdes pipeline and in silico detection of antibiotic resistant genes and MLST of Acinetobacter baumannii/Acinetobacter pittii.
| Sample | Genome size (bp) | Contigs no. | N50 | No. of RNAs | No. of cording sequences | GC content (mol%) | Antibiotic resistance genes | MLSTs |
|---|---|---|---|---|---|---|---|---|
| 258/2368 | 4,054,962 | 101 | 98,038 | 70 | 3,830 | 38.8 | blaADC-25-like; streptomycin 3″-O-adenylyltransferase | |
| 81/8327 | 4,308,663 | 298 | 88,604 | 70 | 4,096 | 38.8 | blaADC-25-like; streptomycin 3″-O-adenylyltransferase | |
| 290/07/6825 | 4,024,466 | 157 | 53,670 | 73 | 3,781 | 38.8 | blaADC-25-like; streptomycin 3″-O-adenylyltransferase | |
| 16/1775 | 3,774,409 | 218 | 38,174 | 70 | 3,648 | 39.0 | blaADC-25-like,blaOXA-69-like; streptomycin 3″-O-adenylyltransferase | Unknown ST |
| 286/07/5411 | 3,694,590 | 288 | 27,470 | 61 | 3,497 | 39.2 | blaADC-25-like,blaOXA-180-like; streptomycin 3″-O-adenylyltransferase | |
| 43/18 | 3,877,281 | 175 | 60,476 | 66 | 3,566 | 39.1 | blaADC-25-like,blaOXA-69-like; streptomycin 3″-O-adenylyltransferase | Unknown ST |
| 242/1259 | 3,896,179 | 126 | 79,304 | 65 | 3,677 | 39.0 | blaADC-25-like,blaOXA-64; streptomycin 3″-O-adenylyltransferase | Unknown ST |
| 260/2529 | 4,058,737 | 128 | 67,655 | 69 | 3,782 | 39.0 | blaADC-25-like,blaOXA-91; streptomycin 3″-O-adenylyltransferase | ST-613 |
| 109/1450 | 3,918,108 | 261 | 33,652 | 73 | 3,735 | 38.9 | blaADC-25-like,blaOXA-69-like; streptomycin 3″-O-adenylyltransferase | ST-427 |
| 249/1482 | 4,067,831 | 63 | 122,702 | 69 | 3,803 | 39.0 | blaADC-25-like,blaOXA-91; streptomycin 3″-O-adenylyltransferase | ST-613 |
| 313/07/9003 | 3,895,889 | 100 | 77,208 | 65 | 3,673 | 38.9 | blaADC-25-like,blaOXA-64; streptomycin 3″-O-adenylyltransferase | Unknown ST |
| 64/5920 | 3,879,717 | 98 | 91,028 | 65 | 3,577 | 38.8 | blaADC-25-like,blaOXA-91; streptomycin 3″-O-adenylyltransferase | ST-613 |