Table 1.
Genomic characteristics of Gardnerella vaginalis strains
| Strain | GenBank accession | Genomic characteristicsa | Source | ||||
|---|---|---|---|---|---|---|---|
| Size (Mb) | Contigs | Plasmids | GC% | CDS | |||
| 00703Bmash | ADET00000000 | 1.566 | 16 | 0 | 42.3 | 1,273 | Vagina |
| 00703C2mash | ADEU00000000 | 1.547 | 22 | 0 | 42.3 | 1,237 | Vagina |
| 00703Dmash | ADEV00000000 | 1.491 | 11 | 0 | 43.4 | 1,172 | Vagina |
| 0288E | ADEN00000000 | 1.709 | 17 | 0 | 41.2 | 1,364 | Endometrium |
| 101 | AEJD00000000 | 1.527 | 43 | 0 | 43.4 | 1,190 | NR |
| 1400E | ADER00000000 | 1.716 | 28 | 0 | 41.2 | 1,370 | Vagina/endometriumb |
| 1500E | ADES00000000 | 1.548 | 27 | 0 | 43 | 1,195 | Vagina/endometriumb |
| 284V | ADEL00000000 | 1.651 | 16 | 0 | 41.2 | 1,304 | Endometrium |
| 315‐A | AFDI00000000 | 1.653 | 13 | 0 | 41.4 | 1,320 | Vagina |
| 409‐05 | CP001849 | 1.618 | 1 | 0 | 42 | 1,190 | Vagina |
| 41V | AEJE00000000 | 1.659 | 76 | 0 | 41.3 | 1,336 | Vagina |
| 5‐1 | ADAN00000000 | 1.673 | 94 | 0 | 42 | 1,294 | Vagina |
| 55152 | ADEQ00000000 | 1.643 | 25 | 0 | 41.3 | 1,322 | Vagina/endometriumb |
| 6119V5 | ADEW00000000 | 1.500 | 12 | 0 | 43.3 | 1,187 | Vagina |
| 6420B | ADEP00000000 | 1.494 | 14 | 0 | 42.2 | 1,162 | Vagina/endometriumb |
| 75712 | ADEM00000000 | 1.673 | 3 | 0 | 41.3 | 1,314 | Vagina |
| AMD | ADAM00000000 | 1.607 | 117 | 0 | 42.1 | 1,217 | Vagina |
| ATCC 14018 | ADNB00000000 | 1.604 | 145 | 0 | 41.2 | 1,313 | NR |
| ATCC 14019 | CP002104 | 1.667 | 1 | 0 | 41.4 | 1,345 | Vagina |
| HMP9231 | CP002725 | 1.727 | 1 | 0 | 41.2 | 1,376 | Endometrium |
| JCP7275 | ATJS00000000 | 1.560 | 202 | 0 | 41 | 1,230 | Vagina |
| JCP7276 | ATJR00000000 | 1.656 | 179 | 0 | 41 | 1,315 | Vagina |
| JCP7659 | ATJQ00000000 | 1.533 | 214 | 0 | 41.9 | 1,251 | Vagina |
| JCP7672 | ATJP00000000 | 1.601 | 169 | 0 | 41.2 | 1,251 | Vagina |
| JCP7719 | ATJO00000000 | 1.559 | 185 | 0 | 42 | 1,302 | Vagina |
| JCP8017A | ATJN00000000 | 1.606 | 187 | 0 | 42.1 | 1,343 | Vagina |
| JCP8017B | ATJM00000000 | 1.599 | 187 | 0 | 42 | 1,335 | Vagina |
| JCP8066 | ATJL00000000 | 1.515 | 197 | 0 | 42.2 | 1,209 | Vagina |
| JCP8070 | ATJK00000000 | 1.476 | 173 | 0 | 42.2 | 1,208 | Vagina |
| JCP8108 | ATJJ00000000 | 1.663 | 176 | 0 | 41.1 | 1,351 | Vagina |
| JCP8151A | ATJI00000000 | 1.556 | 189 | 0 | 42 | 1,259 | Vagina |
| JCP8151B | ATJH00000000 | 1.551 | 185 | 0 | 42.2 | 1,276 | Vagina |
| JCP8481A | ATJG00000000 | 1.567 | 204 | 0 | 42.9 | 1,263 | Vagina |
| JCP8481B | ATJF00000000 | 1.570 | 180 | 0 | 42.9 | 1,251 | Vagina |
| JCP8522 | ATJE00000000 | 1.470 | 191 | 0 | 42.2 | 1,180 | Vagina |
a
Genomes were downloaded from the PATRIC database in February 2015 (ftp://ftp.patricbrc.org/patric2/). CDS = coding DNA sequence.
b
PATRIC metadata differs from report by Ahmed et al. (2012).