Fig. 10.

Frequencies of heavy atom contacts of EL5 with carbohydrate moiety (CAR), pyrophosphate (PP), and undecaprenyl moiety (Und). The frequencies were averaged during the last 2 μs simulations. The existence of heavy atom contacts (distance cutoff = 4.5 Å) for each snapshot was characterized and then the fraction of the contacts was calculated over the last 2 μs. If there is no contact during the last 2 μs, the fraction is 0 (yellow). If the fraction is larger than 0, it is colored white to dark blue. This figure is available in black and white in print and in color at Glycobiology online.