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Assignment of reads by Kraken metagenomics analysis. (a) Gram-positive blood cultures (n=54). Reads are categorized as follows: S. aureus, other staphylococci (identification to genus level only, or non-S. aureus), other bacteria, human and other organisms (e.g. viruses). (b) Gram-negative blood cultures (n=44). Reads are categorized as follows: E. coli, K. pneumoniae, K. oxytoca, other Gram-negative bacteria, Gram-positive bacteria, human and other organisms (e.g. viruses).
