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. 2018 Apr 3;8:5545. doi: 10.1038/s41598-018-23845-x

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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RNA structure modeling of the IRES region. Predicted 3D structure models for the IRES imposing SHAPE reactivity values obtained for the free RNA (A) and upon incubation of the IRES transcript with the R extract (B). Domains 2, 3, 4, and 5, subdomains J and K of domain 4, as well as the GNRA tetraloop, loops, and bulges referred to as in the text are indicated. Detailed structure model of the apical region of domain 3 for the free RNA (C), and incubated with R extract (D).