Table 3.
Top 40 differently expressed circRNAs in squamous cell lung carcinoma
| CircRNA | P-value | FC (abs) | Regulation | circRNA_type | Chrom | Strand | Gene symbol |
|---|---|---|---|---|---|---|---|
| hsa_circRNA_015879 | 0.01386628 | 11.5283772 | Up | Exonic | Chr1 | + | PKP1 |
| hsa_circRNA_026428 | 0.031485562 | 8.5694066 | Up | Exonic | Chr12 | - | KRT6A |
| hsa_circRNA_103830 | 0.003522181 | 7.7518175 | Up | Exonic | Chr5 | - | HMGCS1 |
| hsa_circRNA_104811 | 0.01528389 | 7.7173547 | Up | Exonic | Chr9 | + | NTRK2 |
| hsa_circRNA_104870 | 0.003397307 | 7.4855021 | Up | Exonic | Chr9 | - | PTGR1 |
| hsa_circRNA_026358 | 0.023629284 | 6.5706933 | Up | Exonic | Chr12 | + | KRT7 |
| hsa_circRNA_103827 | 0.001281935 | 6.0012377 | Up | Exonic | Chr5 | - | HMGCS1 |
| hsa_circRNA_001716 | 0.002075333 | 5.4783997 | Up | Antisense | Chr7 | - | LIMK1 |
| hsa_circRNA_103829 | 0.005658113 | 5.3675678 | Up | Exonic | Chr5 | - | HMGCS1 |
| hsa_circRNA_026195 | 0.027202535 | 5.2398221 | Up | Exonic | Chr12 | - | RACGAP1 |
| hsa_circRNA_087856 | 0.004488697 | 4.6929911 | Up | Exonic | Chr9 | + | RAD23B |
| hsa_circRNA_001586 | 0.03168581 | 4.5146028 | Up | Sense overlapping | Chr6 | - | HIST1H3D |
| hsa_circRNA_400446 | 0.044576345 | 4.4676052 | Up | Exonic | Chr1 | + | KIAA1804 |
| hsa_circRNA_001880 | 0.008970229 | 4.3776375 | Up | Exonic | Chr9 | + | RAD23B |
| hsa_circRNA_001681 | 0.044916399 | 4.339333 | Up | Exonic | Chr7 | - | RAPGEF5 |
| hsa_circRNA_105041 | 0.029236425 | 4.2849807 | Up | Exonic | ChrX | - | G6PD |
| hsa_circRNA_104852 | 0.016202792 | 4.2686317 | Up | Exonic | Chr9 | + | RAD23B |
| hsa_circRNA_103565 | 0.014032939 | 4.2594858 | Up | Exonic | Chr3 | - | DLG1 |
| hsa_circRNA_103499 | 0.033015781 | 4.1795048 | Up | Exonic | Chr3 | + | RSRC1 |
| hsa_circRNA_103831 | 0.03312385 | 4.1121241 | Up | Exonic | Chr5 | - | HMGCS1 |
| hsa_circRNA_001640 | 0.029103156 | 8.3301093 | Down | Exonic | Chr6 | - | EPB41L2 |
| hsa_circRNA_005536 | 0.03934785 | 6.8276119 | Down | Exonic | Chr2 | - | RFX8 |
| hsa_circRNA_105055 | 0.047690013 | 6.4173918 | Down | Antisense | ChrX | + | CDR1 |
| hsa_circRNA_001729 | 0.034586505 | 6.142103 | Down | Antisense | Chr16 | - | ZNF646 |
| hsa_circRNA_406549 | 0.014367194 | 4.4334509 | Down | Exonic | Chr4 | - | NR3C2 |
| hsa_circRNA_405974 | 0.003242037 | 4.3796355 | Down | Intronic | Chr2 | - | ACVR1 |
| hsa_circRNA_000122 | 0.037309993 | 4.2534161 | Down | Intronic | Chr1 | + | NBPF10 |
| hsa_circRNA_102878 | 0.019240939 | 4.1755922 | Down | Exonic | Chr2 | + | SLC39A10 |
| hsa_circRNA_002131 | 0.010388138 | 4.171018 | Down | Exonic | Chr8 | + | BNIP3L |
| hsa_circRNA_103383 | 0.032687391 | 4.1524014 | Down | Exonic | Chr3 | + | MAPKAPK3 |
| hsa_circRNA_104169 | 0.029684253 | 3.8717715 | Down | Exonic | Chr6 | + | SOBP |
| hsa_circRNA_103730 | 0.045580688 | 3.8610618 | Down | Exonic | Chr4 | - | PRDM5 |
| hsa_circRNA_101911 | 0.038859021 | 3.7748384 | Down | Exonic | Chr16 | - | FANCA |
| hsa_circRNA_020624 | 0.020144053 | 3.6887455 | Down | Exonic | Chr11 | + | IFITM1 |
| hsa_circRNA_102051 | 0.023760037 | 3.5624094 | Down | Exonic | Chr17 | + | TADA2A |
| hsa_circRNA_102556 | 0.015587946 | 3.5538688 | Down | Exonic | Chr19 | + | AXL |
| hsa_circRNA_007443 | 0.041903051 | 3.5493882 | Down | Exonic | Chr8 | - | RUNX1T1 |
| hsa_circRNA_103908 | 0.01913262 | 3.5444991 | Down | Exonic | Chr5 | - | EDIL3 |
| hsa_circRNA_403691 | 0.009785705 | 3.4970096 | Down | Exonic | Chr6 | + | LOC101927768 |
| hsa_circRNA_100789 | 0.038176191 | 3.456096 | Down | Exonic | Chr11 | + | CAPRIN1 |
FDR, false discover rate; FC, fold change