Table 2.
Variation in repeat length among genomic eggplant perfect and imperfect SSRs.
| SSR type | Perfect motif |
Imperfect motif |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Kinds | Count | % | Density (SSRs/Mbp) | Cumulative (Mbp) | Cumulative (%) | Mean repeat number | Count | % | Density (SSRs/Mbp) | |
| Mono- | 2 | 11,152 | 8.4% | 10.5 | 0.21 | 6.1% | 18.5 | 11,891 | 6.7% | 11.2 |
| Di- | 4 | 56,880 | 42.8% | 53.7 | 1.74 | 51.1% | 15.3 | 62,513 | 35.0% | 59.1 |
| Tri- | 10 | 49,088 | 37.0% | 46.4 | 1.09 | 32.1% | 7.4 | 49,873 | 28.0% | 47.1 |
| Tetra- | 33 | 9,428 | 7.1% | 8.9 | 0.19 | 5.5% | 5.0 | 16,246 | 9.1% | 15.3 |
| Penta- | 80 | 3,750 | 2.8% | 3.5 | 0.09 | 2.8% | 5.0 | 26,684 | 15.0% | 25.2 |
| Hexa- | 207 | 2,533 | 1.9% | 2.4 | 0.08 | 2.5% | 5.5 | 11,200 | 6.3% | 10.6 |
| Total/mean | 336 | 132,831 | 100.0% | 125.5 | 3.40 | 100.0% | 11.4 | 178,407 | 100.0% | 168.5 |